Étienne Mollier pushed to branch master at Debian Med / bamtools
Commits: debb897c by Étienne Mollier at 2023-12-15T18:50:37+01:00 d/control: add myself to uploaders. - - - - - 6a3ade9f by Étienne Mollier at 2023-12-15T18:58:07+01:00 d/rules: preserve pristine Doxyfile. Closes: #1043881 - - - - - cb79c20b by Étienne Mollier at 2023-12-15T19:07:00+01:00 typo.patch: new: fix typo caught by lintian. - - - - - 46e2b618 by Étienne Mollier at 2023-12-15T19:13:10+01:00 ready to upload to unstable. - - - - - 5 changed files: - debian/changelog - debian/control - debian/patches/series - + debian/patches/typo.patch - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +bamtools (2.5.2+dfsg-5) unstable; urgency=medium + + * d/control: add myself to uploaders. + * d/rules: preserve pristine Doxyfile. (Closes: #1043881) + * typo.patch: new: fix typo caught by lintian. + + -- Étienne Mollier <[email protected]> Fri, 15 Dec 2023 19:09:45 +0100 + bamtools (2.5.2+dfsg-4) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -3,6 +3,7 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Michael R. Crusoe <[email protected]>, Andreas Tille <[email protected]>, Kevin Murray <[email protected]>, + Étienne Mollier <[email protected]> Section: science Priority: optional Build-Depends: debhelper-compat (= 13), ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ 0001-ignore-thirdparty-and-fix-jsoncpp.patch shared_and_static.patch #fix_soversion.patch +typo.patch ===================================== debian/patches/typo.patch ===================================== @@ -0,0 +1,17 @@ +Description: fix typo caught by lintian. +Author: Étienne Mollier <[email protected]> +Forwarded: https://github.com/pezmaster31/bamtools/pull/231 +Last-Update: 2023-12-15 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- bamtools.orig/src/toolkit/bamtools_filter.cpp ++++ bamtools/src/toolkit/bamtools_filter.cpp +@@ -1020,7 +1020,7 @@ + const std::string isFirstMateDesc = "keep only alignments marked as first mate?"; + const std::string isMappedDesc = "keep only alignments that were mapped?"; + const std::string isMateMappedDesc = "keep only alignments with mates that mapped"; +- const std::string isMateReverseDesc = "keep only alignments with mate on reverese strand?"; ++ const std::string isMateReverseDesc = "keep only alignments with mate on reverse strand?"; + const std::string isPairedDesc = "keep only alignments that were sequenced as paired?"; + const std::string isPrimaryDesc = "keep only alignments marked as primary?"; + const std::string isProperPairDesc = "keep only alignments that passed PE resolution?"; ===================================== debian/rules ===================================== @@ -18,6 +18,7 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) endif override_dh_auto_build-indep: + cp docs/Doxyfile docs/Doxyfile.orig doxygen -u docs/Doxyfile doxygen docs/Doxyfile @@ -40,3 +41,6 @@ override_dh_install-indep: describe-current-version: git describe --tags upstream | sed 's,^release-,,;s,-,+,;s,-,~,;' + +execute_after_dh_auto_clean: + test ! -f docs/Doxyfile.orig || mv docs/Doxyfile.orig docs/Doxyfile View it on GitLab: https://salsa.debian.org/med-team/bamtools/-/compare/182162589ff8497424c4100c565be0a5532ce512...46e2b618cbbbab8d771324c4f6739d70734e29b2 -- View it on GitLab: https://salsa.debian.org/med-team/bamtools/-/compare/182162589ff8497424c4100c565be0a5532ce512...46e2b618cbbbab8d771324c4f6739d70734e29b2 You're receiving this email because of your account on salsa.debian.org.
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