Pierre Gruet pushed to branch upstream at Debian Med / picard-tools
Commits: c1ab316e by Pierre Gruet at 2023-12-14T13:16:36+01:00 New upstream version 3.1.1+dfsg - - - - - 30 changed files: - + .gitattributes - + .github/workflows/cloud_tests.yml - .gitignore - build.gradle - gradle/wrapper/gradle-wrapper.properties - gradlew - src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java - src/main/java/picard/analysis/CollectOxoGMetrics.java - src/main/java/picard/analysis/CollectWgsMetrics.java - src/main/java/picard/analysis/SinglePassSamProgram.java - src/main/java/picard/analysis/directed/CollectTargetedMetrics.java - src/main/java/picard/analysis/replicates/CollectIndependentReplicateMetrics.java - src/main/java/picard/cmdline/CommandLineProgram.java - src/main/java/picard/cmdline/PicardCommandLine.java - src/main/java/picard/fingerprint/CheckFingerprint.java - src/main/java/picard/fingerprint/CrosscheckFingerprints.java - src/main/java/picard/fingerprint/Fingerprint.java - src/main/java/picard/fingerprint/FingerprintChecker.java - src/main/java/picard/illumina/IlluminaBasecallsToFastq.java - src/main/java/picard/illumina/MarkIlluminaAdapters.java - src/main/java/picard/illumina/parser/readers/FilterFileReader.java - + src/main/java/picard/nio/DeleteRecursive.java - + src/main/java/picard/nio/GATKBucketUtils.java - + src/main/java/picard/nio/GATKIOUtils.java - + src/main/java/picard/nio/GATKUtils.java - src/main/java/picard/nio/PicardHtsPath.java - src/main/java/picard/reference/ExtractSequences.java - src/main/java/picard/sam/FastqToSam.java - src/main/java/picard/sam/MergeBamAlignment.java - src/main/java/picard/sam/markduplicates/MarkDuplicates.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/c1ab316e8d2d59c90e9504e26b97b563315c8daf -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/c1ab316e8d2d59c90e9504e26b97b563315c8daf You're receiving this email because of your account on salsa.debian.org.
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