Étienne Mollier pushed to branch master at Debian Med / pirs
Commits: 7d57ce0f by Étienne Mollier at 2023-12-18T14:05:57+01:00 initialize changelog. - - - - - b179950d by Étienne Mollier at 2023-12-18T14:22:11+01:00 d/rules: define BOOST_TIMER_ENABLE_DEPRECATED. This flag is passed to C preprocessor options to fix failure to build from source with boost 1.83. Closes: #1056023 - - - - - 00aed64f by Étienne Mollier at 2023-12-18T14:24:25+01:00 d/control: gnuplot-qt as default gnuplot dependency. - - - - - 1ffed4c4 by Étienne Mollier at 2023-12-18T14:25:25+01:00 d/control: declare compliance to standars version 4.6.2. - - - - - 754a9e6c by Étienne Mollier at 2023-12-18T14:38:51+01:00 typos.patch: new: fix typos caught by lintian. - - - - - b797bb73 by Étienne Mollier at 2023-12-18T14:42:06+01:00 ready to upload to unstable. - - - - - 5 changed files: - debian/changelog - debian/control - debian/patches/series - + debian/patches/typos.patch - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,20 @@ +pirs (2.0.2+dfsg-12) unstable; urgency=medium + + * Team upload. + + [ Andreas Tille ] + * Forward patch + + [ Étienne Mollier ] + * d/rules: define BOOST_TIMER_ENABLE_DEPRECATED. + This flag is passed to C preprocessor options to fix failure to build + from source with boost 1.83. (Closes: #1056023) + * d/control: gnuplot-qt as default gnuplot dependency. + * d/control: declare compliance to standars version 4.6.2. + * typos.patch: new: fix typos caught by lintian. + + -- Étienne Mollier <[email protected]> Mon, 18 Dec 2023 14:39:21 +0100 + pirs (2.0.2+dfsg-11) unstable; urgency=medium * Standards-Version: 4.6.1 (routine-update) ===================================== debian/control ===================================== @@ -7,7 +7,7 @@ Build-Depends: debhelper-compat (= 13), libboost-dev, zlib1g-dev, libgzstream-dev -Standards-Version: 4.6.1 +Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pirs Vcs-Git: https://salsa.debian.org/med-team/pirs.git Homepage: https://github.com/galaxy001/pirs @@ -19,7 +19,7 @@ Depends: ${shlibs:Depends}, ${misc:Depends}, pirs-profiles, fonts-liberation, - gnuplot + gnuplot-qt | gnuplot Description: Profile based Illumina pair-end Reads Simulator The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as ===================================== debian/patches/series ===================================== @@ -3,3 +3,4 @@ Fix-spelling-of-sse2-option.patch do_not_seek_for_arial.ttf.patch Remove-mtune-compiler-flag.patch gcc-12.patch +typos.patch ===================================== debian/patches/typos.patch ===================================== @@ -0,0 +1,28 @@ +Description: fix typos caught by lintian. +Author: Étienne Mollier <[email protected]> +Forwarded: https://github.com/galaxy001/pirs/pull/16 +Last-Update: 2023-12-18 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- pirs.orig/README ++++ pirs/README +@@ -244,7 +244,7 @@ + several parameters, it is very difficult to determine exactly + what needs to be done to make the error rate be a given + value. We try to adjust the probabilities of getting each +- quality score in order to accomodate the user-supplied error ++ quality score in order to accommodate the user-supplied error + rate. However, depending on your input sequences, the actual + error rate simulated by pIRS could be off by 20% or more. + Please check the informational output to see the final error +--- pirs.orig/src/pirs/pirs_simulate.cpp ++++ pirs/src/pirs/pirs_simulate.cpp +@@ -194,7 +194,7 @@ + " several parameters, it is very difficult to determine exactly\n" + " what needs to be done to make the error rate be a given\n" + " value. We try to adjust the probabilities of getting each\n" +-" quality score in order to accomodate the user-supplied error\n" ++" quality score in order to accommodate the user-supplied error\n" + " rate. However, depending on your input sequences, the actual\n" + " error rate simulated by pIRS could be off by 20% or more.\n" + " Please check the informational output to see the final error\n" ===================================== debian/rules ===================================== @@ -3,6 +3,7 @@ # DH_VERBOSE := 1 export DEB_BUILD_MAINT_OPTIONS = hardening=+all +export DEB_CPPFLAGS_MAINT_APPEND = -DBOOST_TIMER_ENABLE_DEPRECATED include /usr/share/dpkg/default.mk View it on GitLab: https://salsa.debian.org/med-team/pirs/-/compare/8cbe37c5e821d1a4a3efaa528cb06724a7115443...b797bb7372f03937ace2d1220056d5ace16b8bcf -- View it on GitLab: https://salsa.debian.org/med-team/pirs/-/compare/8cbe37c5e821d1a4a3efaa528cb06724a7115443...b797bb7372f03937ace2d1220056d5ace16b8bcf You're receiving this email because of your account on salsa.debian.org.
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