Étienne Mollier pushed to branch upstream at Debian Med / python-pyfaidx
Commits: ed3991b5 by Étienne Mollier at 2024-01-20T18:36:32+01:00 New upstream version 0.8.1.1 - - - - - 2 changed files: - README.rst - pyfaidx/__init__.py Changes: ===================================== README.rst ===================================== @@ -40,6 +40,8 @@ or download a `release <https://github.com/mdshw5/pyfaidx/releases>`_ and: If using ``pip install --user`` make sure to add ``/home/$USER/.local/bin`` to your ``$PATH`` (on linux) or ``/Users/$USER/Library/Python/{python version}/bin`` (on macOS) if you want to run the ``faidx`` script. +Python 2.6 and 2.7 users may choose to use a package version from `v0.7.2 <https://github.com/mdshw5/pyfaidx/releases/tag/v0.7.2.2>`_ or earier. + Usage ----- ===================================== pyfaidx/__init__.py ===================================== @@ -431,7 +431,8 @@ class Faidx(object): raise UnsupportedCompressionFormat( "Compressed FASTA is only supported in BGZF format. Use " "the samtools bgzip utility (instead of gzip) to " - "compress your FASTA." + "compress your FASTA. " + "For example: gunzip file.fa.gz; bgzip file.fa" ) elif self.filename.lower().endswith(('.bz2', '.zip')): raise UnsupportedCompressionFormat( View it on GitLab: https://salsa.debian.org/med-team/python-pyfaidx/-/commit/ed3991b508bb20d56f50000886c5cc4d4d35a6c1 -- View it on GitLab: https://salsa.debian.org/med-team/python-pyfaidx/-/commit/ed3991b508bb20d56f50000886c5cc4d4d35a6c1 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
