Andreas Tille pushed to branch master at Debian Med / bio-tradis
Commits: 7d1d0711 by Andreas Tille at 2024-01-25T15:02:37+01:00 Fix watch file - - - - - 9864c756 by Andreas Tille at 2024-01-25T15:04:26+01:00 Fix clean target - - - - - 2b62d57f by Andreas Tille at 2024-01-25T15:04:41+01:00 routine-update: Standards-Version: 4.6.2 - - - - - 0a363dc9 by Andreas Tille at 2024-01-25T15:04:41+01:00 routine-update: debhelper-compat 13 - - - - - 4afadab2 by Andreas Tille at 2024-01-25T15:04:45+01:00 routine-update: Add salsa-ci file - - - - - 8c59493a by Andreas Tille at 2024-01-25T15:04:46+01:00 routine-update: Rules-Requires-Root: no - - - - - 2f3c1d5a by Andreas Tille at 2024-01-25T15:04:53+01:00 Set upstream metadata fields: Bug-Database, Bug-Submit. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-bug-tracking See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html - - - - - f1f9d0cc by Andreas Tille at 2024-01-25T15:27:21+01:00 dh_install now works even without debian/install - - - - - 9aad83b7 by Andreas Tille at 2024-01-25T15:32:55+01:00 * r-bioc-edger is back in Debian thus move it to Recommends and drop the outdated debian/NEWS * artemis is available now thus move it to Recommends - - - - - 6a14c8a4 by Andreas Tille at 2024-01-25T15:37:18+01:00 Upload to unstable - - - - - 8 changed files: - − debian/NEWS - debian/changelog - + debian/clean - debian/control - − debian/install - + debian/salsa-ci.yml - debian/upstream/metadata - debian/watch Changes: ===================================== debian/NEWS deleted ===================================== @@ -1,11 +0,0 @@ -bio-tradis (1.3.3+dfsg-3) unstable; urgency=medium - - The package r-bioc-edger was removed from Debian since it was severely - Outdated. An upgrade is not possible since recent version of BioConductor - Edger can not be distributed by Debian since it is using non-distributable - Code locfit. - - Thus you need to manually install Edger in your R environment. - - -- Andreas Tille <[email protected]> Mon, 12 Feb 2018 15:05:27 +0100 - ===================================== debian/changelog ===================================== @@ -1,3 +1,20 @@ +bio-tradis (1.4.5+dfsg2-2) unstable; urgency=medium + + * Fix watch file + * Fix clean target + Closes: #1043774 + * Standards-Version: 4.6.2 (routine-update) + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Bug-Database, Bug-Submit. + * dh_install now works even without debian/install + * r-bioc-edger is back in Debian thus move it to Recommends and + drop the outdated debian/NEWS + * artemis is available now thus move it to Recommends + + -- Andreas Tille <[email protected]> Thu, 25 Jan 2024 15:34:52 +0100 + bio-tradis (1.4.5+dfsg2-1) unstable; urgency=medium * Team upload. ===================================== debian/clean ===================================== @@ -0,0 +1,4 @@ +expected.*.nohead.mapped +mapped.nohead.out +output.fastq +test.plot.unzipped ===================================== debian/control ===================================== @@ -4,7 +4,7 @@ Uploaders: Andreas Tille <[email protected]> Section: perl # Testsuite: autopkgtest-pkg-perl Priority: optional -Build-Depends: debhelper-compat (= 12) +Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-perl-perl, libenv-path-perl, libexception-class-perl, @@ -20,10 +20,11 @@ Build-Depends-Indep: libbio-perl-perl, smalt, tabix, bwa -Standards-Version: 4.4.1 +Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/bio-tradis Vcs-Git: https://salsa.debian.org/med-team/bio-tradis.git Homepage: https://github.com/sanger-pathogens/Bio-Tradis +Rules-Requires-Root: no Package: bio-tradis Architecture: all @@ -40,8 +41,8 @@ Depends: ${misc:Depends}, r-base-core, r-cran-getopt, r-cran-mass -Suggests: artemis, - r-bioc-edger +Recommends: artemis, + r-bioc-edger Description: analyse the output from TraDIS analyses of genomic sequences Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. ===================================== debian/install deleted ===================================== @@ -1,2 +0,0 @@ -lib/Bio usr/share/perl5 -bin usr ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -1,4 +1,6 @@ Archive: CPAN +Bug-Database: https://github.com/sanger-pathogens/Bio-Tradis/issues +Bug-Submit: https://github.com/sanger-pathogens/Bio-Tradis/issues/new Reference: Author: "Lars Barquist and Matthew Mayho and Carla Cummins and Amy K. Cain and Christine\ \ J. Boinett and Andrew J. Page and Gemma C. Langridge and Michael A. Quail and\ ===================================== debian/watch ===================================== @@ -1,3 +1,3 @@ version=4 -opts="uversionmangle=s/^1.1/1.1./,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \ +opts="uversionmangle=s/^1.1/1.1./,repacksuffix=+dfsg,dversionmangle=auto,repack,compression=xz" \ https://metacpan.org/release/Bio-Tradis .*/Bio-Tradis-v?@ANY_VERSION@@ARCHIVE_EXT@$ View it on GitLab: https://salsa.debian.org/med-team/bio-tradis/-/compare/039ffb650083bfffffab050f1925fe56e37067b5...6a14c8a48dd0307eaa1f8ef8e80f500b2e90815b -- View it on GitLab: https://salsa.debian.org/med-team/bio-tradis/-/compare/039ffb650083bfffffab050f1925fe56e37067b5...6a14c8a48dd0307eaa1f8ef8e80f500b2e90815b You're receiving this email because of your account on salsa.debian.org.
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