Étienne Mollier pushed to branch master at Debian Med / jellyfish


Commits:
c323f160 by Lukas Märdian at 2024-02-28T15:00:13+01:00
Rename libraries for 64-bit time_t transition.

Closes: #1064157
Signed-off-by: Étienne Mollier <[email protected]>

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/libjellyfish-2.0-2.lintian-overrides → 
debian/libjellyfish-2.0-2t64.lintian-overrides
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+jellyfish (2.3.1-2.1) unstable; urgency=medium
+
+  * Non-maintainer upload.
+  * Rename libraries for 64-bit time_t transition.  Closes: #1064157
+
+ -- Lukas Märdian <[email protected]>  Wed, 28 Feb 2024 13:23:36 +0000
+
 jellyfish (2.3.1-2) unstable; urgency=medium
 
   [ Zhang Na ]


=====================================
debian/control
=====================================
@@ -6,8 +6,8 @@ Uploaders: Shaun Jackman <[email protected]>,
            Étienne Mollier <[email protected]>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 13),
-               d-shlibs,
+Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
+               d-shlibs (>= 0.106~),
                autoconf-archive,
                yaggo,
                pkg-config,
@@ -32,7 +32,7 @@ Package: jellyfish
 Architecture: amd64 arm64 armel armhf i386 mips64el ppc64el hppa hurd-i386 
ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 loong64
 Depends: ${shlibs:Depends},
          ${misc:Depends},
-         libjellyfish-2.0-2 (= ${binary:Version})
+         libjellyfish-2.0-2t64 (= ${binary:Version})
 Description: count k-mers in DNA sequences
  JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
  DNA. A k-mer is a substring of length k, and counting the occurrences
@@ -48,7 +48,10 @@ Description: count k-mers in DNA sequences
  binary format, which can be translated into a human-readable text
  format using the "jellyfish dump" command.
 
-Package: libjellyfish-2.0-2
+Package: libjellyfish-2.0-2t64
+Provides: ${t64:Provides}
+Replaces: libjellyfish-2.0-2
+Conflicts: libjellyfish-2.0-2 (<< ${source:Version})
 Architecture: amd64 arm64 armel armhf i386 mips64el ppc64el hppa hurd-i386 
ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 loong64
 Multi-Arch: same
 Section: libs
@@ -76,7 +79,7 @@ Package: libjellyfish-2.0-dev
 Architecture: amd64 arm64 armel armhf i386 mips64el ppc64el hppa hurd-i386 
ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 loong64
 Section: libdevel
 Depends: ${misc:Depends},
-         libjellyfish-2.0-2 (= ${binary:Version})
+         libjellyfish-2.0-2t64 (= ${binary:Version})
 Description: count k-mers in DNA sequences (development files of jellyfish)
  JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
  DNA. A k-mer is a substring of length k, and counting the occurrences


=====================================
debian/libjellyfish-2.0-2.lintian-overrides → 
debian/libjellyfish-2.0-2t64.lintian-overrides
=====================================
@@ -1,2 +1,3 @@
 # Upstream decided to use a dynamic library without really intending to make 
this a development package
-libjellyfish-2.0-2: no-symbols-control-file usr/lib/*/libjellyfish-*.so.*
+libjellyfish-2.0-2t64: no-symbols-control-file usr/lib/*/libjellyfish-*.so.*
+libjellyfish-2.0-2t64: package-name-doesnt-match-sonames libjellyfish-2.0-2


=====================================
debian/rules
=====================================
@@ -43,6 +43,7 @@ override_dh_auto_install:
        chrpath --delete 
debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
        dh_install
        d-shlibmove --commit \
+                   --t64 \
                    --multiarch \
                    --devunversioned \
                    --movedev 
"debian/tmp/usr/include/$(DEB_SOURCE)*/$(DEB_SOURCE)/*.hpp" 
usr/include/$(DEB_SOURCE) \



View it on GitLab: 
https://salsa.debian.org/med-team/jellyfish/-/commit/c323f160cb50390534010c77aa5efd1fdfbc126f

-- 
View it on GitLab: 
https://salsa.debian.org/med-team/jellyfish/-/commit/c323f160cb50390534010c77aa5efd1fdfbc126f
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