Michael R. Crusoe pushed to branch master at Debian Med / libbpp-raa
Commits: 808b9db5 by Michael R. Crusoe at 2024-03-25T16:03:52+01:00 d/patches/unforce-cxxflags.patch: merge with upstreams flags especially "-std=c++11"; and forward this patch to them. - - - - - 1c3f7359 by Michael R. Crusoe at 2024-03-25T16:03:53+01:00 d/control: rely on substvars for more dependencies. - - - - - 9b53f918 by Michael R. Crusoe at 2024-03-25T16:03:53+01:00 Silence some false-positive Lintian warnings and errors related to the t64 transition. - - - - - bf4cfee6 by Michael R. Crusoe at 2024-03-25T16:05:08+01:00 routine-update: Standards-Version: 4.6.2 - - - - - 6 changed files: - debian/changelog - debian/control - debian/libbpp-raa4t64.lintian-overrides - debian/libbpp-raa4t64.symbols.amd64 - debian/patches/unforce-cxxflags.patch - + debian/source/lintian-overrides Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,15 @@ +libbpp-raa (2.4.1-8) UNRELEASED; urgency=medium + + * Team upload. + * d/patches/unforce-cxxflags.patch: merge with upstreams flags + especially "-std=c++11"; and forward this patch to them. + * d/control: rely on substvars for more dependencies. + * Silence some false-positive Lintian warnings and errors related to + the t64 transition. + * Standards-Version: 4.6.2 (routine-update) + + -- Michael R. Crusoe <[email protected]> Mon, 25 Mar 2024 15:44:48 +0100 + libbpp-raa (2.4.1-7.1) unstable; urgency=medium * Non-maintainer upload. ===================================== debian/control ===================================== @@ -9,7 +9,7 @@ Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), d-shlibs (>= 0.106~), zlib1g-dev, libbpp-seq-dev -Standards-Version: 4.6.1 +Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-raa Vcs-Git: https://salsa.debian.org/med-team/libbpp-raa.git Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page @@ -20,7 +20,7 @@ Architecture: any Section: libdevel Depends: libbpp-raa4t64 (= ${binary:Version}), ${misc:Depends}, - libbpp-seq-dev + ${devlibs:Depends} Multi-Arch: same Description: Bio++ Remote Acnuc Access library development files This library contains utilitary and classes to query public databases @@ -36,8 +36,7 @@ Conflicts: libbpp-raa4 (<< ${source:Version}) Architecture: any Section: libs Depends: ${shlibs:Depends}, - ${misc:Depends}, - libbpp-seq12 + ${misc:Depends} Multi-Arch: same Description: Bio++ Remote Acnuc Access library This library contains utilitary and classes to query public databases ===================================== debian/libbpp-raa4t64.lintian-overrides ===================================== @@ -1 +1,2 @@ libbpp-raa4t64: package-name-doesnt-match-sonames libbpp-raa4 +libbpp-raa4t64: conflicts-with-version libbpp-raa4 (<< 2.4.1-8) ===================================== debian/libbpp-raa4t64.symbols.amd64 ===================================== @@ -1,4 +1,5 @@ libbpp-raa.so.4 libbpp-raa4t64 #MINVER# +* Build-Depends-Package: libbpp-raa-dev _ZN3bpp14RaaSpeciesTree10firstChildEi@Base 2.4.1 _ZN3bpp14RaaSpeciesTree11nextSynonymEi@Base 2.4.1 _ZN3bpp14RaaSpeciesTree5countEi@Base 2.4.1 @@ -77,8 +78,6 @@ libbpp-raa.so.4 libbpp-raa4t64 #MINVER# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.1 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.1 - _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base 2.4.1 - _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base 2.4.1 _ZSt18__do_uninit_fill_nIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmS5_ET_S7_T0_RKT1_@Base 2.4.1 _ZTINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 _ZTSNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1 ===================================== debian/patches/unforce-cxxflags.patch ===================================== @@ -1,20 +1,18 @@ From: Gert Wollny <[email protected]> Date: Wed, 29 Jun 2014 16:52:43 +0200 -Subject: Do not override Debian CXX flags -Comment: Upstream version 2.3.0 now has additional -std=c++11 which might - be needed to be added explicitly +Subject: Do not override user-provided CXX flags +Forwarded: https://github.com/BioPP/bpp-raa/pull/4 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -9,8 +9,8 @@ cmake_minimum_required (VERSION 2.8.11) +--- libbpp-raa.orig/CMakeLists.txt ++++ libbpp-raa/CMakeLists.txt +@@ -9,8 +9,8 @@ project (bpp-raa C CXX) # Compile options -set (CMAKE_CXX_FLAGS "-std=c++11 -Wall") -+#set (CMAKE_CXX_FLAGS "-std=c++11 -g") -set (CMAKE_C_FLAGS "-Wall") -+# set (CMAKE_C_FLAGS "-Wall") ++add_compile_options(-Wall) ++set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11") IF(NOT CMAKE_BUILD_TYPE) SET(CMAKE_BUILD_TYPE Release CACHE STRING - ===================================== debian/source/lintian-overrides ===================================== @@ -0,0 +1,2 @@ +# false positive from the t64 transition +libbpp-raa source: version-substvar-for-external-package Conflicts ${source:Version} libbpp-raa4t64 -> libbpp-raa4 [debian/control:35] View it on GitLab: https://salsa.debian.org/med-team/libbpp-raa/-/compare/5b87fa6c77951cd8a3b5384ea6a7da7c08f4341c...bf4cfee62e0573cae4802247714ab7c5bdcf6c01 -- View it on GitLab: https://salsa.debian.org/med-team/libbpp-raa/-/compare/5b87fa6c77951cd8a3b5384ea6a7da7c08f4341c...bf4cfee62e0573cae4802247714ab7c5bdcf6c01 You're receiving this email because of your account on salsa.debian.org.
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