Andreas Tille pushed to branch master at Debian Med / microbiomeutil
Commits: 759fcdab by Andreas Tille at 2024-04-10T15:39:08+02:00 Fix implicit declaration of function isprint - - - - - a4992f6e by Andreas Tille at 2024-04-10T15:39:57+02:00 routine-update: Standards-Version: 4.7.0 - - - - - 879ba250 by Andreas Tille at 2024-04-10T13:40:09+00:00 Use secure URI in Homepage field. Changes-By: lintian-brush Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html - - - - - b34d83bb by Andreas Tille at 2024-04-10T15:59:52+02:00 Lintian-overrides (see lintian bug #1017966) - - - - - 480abe4f by Andreas Tille at 2024-04-10T16:03:01+02:00 Add DEP3 field "Forwarded: no (upstream is dead)" - - - - - 4ca75718 by Andreas Tille at 2024-04-10T16:06:28+02:00 Upload to unstable - - - - - 11 changed files: - debian/changelog - debian/control - debian/patches/cross.patch - debian/patches/enable_tests_in_local_dir.patch - debian/patches/find_relocated_libraries.patch - debian/patches/find_relocated_resources.patch - debian/patches/fix_perl_interpreter.patch - debian/patches/hardening.patch - + debian/patches/implicit-function.patch - debian/patches/series - + debian/source/lintian-overrides Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,14 @@ +microbiomeutil (20101212+dfsg1-6) unstable; urgency=medium + + * Fix implicit declaration of function isprint + Closes: #1066532 + * Standards-Version: 4.7.0 (routine-update) + * Use secure URI in Homepage field. + * Lintian-overrides (see lintian bug #1017966) + * Add DEP3 field "Forwarded: no (upstream is dead)" + + -- Andreas Tille <[email protected]> Wed, 10 Apr 2024 16:03:07 +0200 + microbiomeutil (20101212+dfsg1-5) unstable; urgency=medium [ Helmut Grohne ] ===================================== debian/control ===================================== @@ -8,10 +8,10 @@ Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper -Standards-Version: 4.6.0 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/microbiomeutil Vcs-Git: https://salsa.debian.org/med-team/microbiomeutil.git -Homepage: http://microbiomeutil.sourceforge.net/ +Homepage: https://microbiomeutil.sourceforge.net/ Rules-Requires-Root: no Package: microbiomeutil ===================================== debian/patches/cross.patch ===================================== @@ -2,6 +2,7 @@ Last-Update: Sun, 9 Jan 2022 20:11:27 +0100 Author: Helmut Grohne <[email protected]> Bug-Debian: https://bugs.debian.org/1003411 Description: Do not hard code the build architecture compiler +Forwarded: no (upstream is dead) --- microbiomeutil-20101212+dfsg1.orig/NAST-iEr/Makefile +++ microbiomeutil-20101212+dfsg1/NAST-iEr/Makefile ===================================== debian/patches/enable_tests_in_local_dir.patch ===================================== @@ -2,6 +2,7 @@ Author: Andreas Tille <[email protected]> Last-Update: Wed, 20 Jan 2016 09:10:18 +0100 Description: To run build time tests enable running the scripts from build path +Forwarded: no (upstream is dead) --- a/NAST-iEr/run_NAST-iEr.pl +++ b/NAST-iEr/run_NAST-iEr.pl ===================================== debian/patches/find_relocated_libraries.patch ===================================== @@ -1,6 +1,8 @@ -# Due to liberal use of FindBin, ChimeraSlayer can't be run from a symlink. -# So I'm hard-coding the location to get around this. -# Patch added by Tim Booth, see changelog +Description: Due to liberal use of FindBin, ChimeraSlayer can't be run from a symlink. + So hard-coding the location to get around this. +Author: Tim Booth <[email protected]> +Forwarded: no (upstream is dead) + --- a/ChimeraSlayer/ChimeraSlayer.pl +++ b/ChimeraSlayer/ChimeraSlayer.pl @@ -4,7 +4,9 @@ ===================================== debian/patches/find_relocated_resources.patch ===================================== @@ -1,5 +1,6 @@ Author: Tim Booth <[email protected]> Description: Adapt path of some resources to Debian installation +Forwarded: no (upstream is dead) --- a/ChimeraSlayer/ChimeraSlayer.pl +++ b/ChimeraSlayer/ChimeraSlayer.pl ===================================== debian/patches/fix_perl_interpreter.patch ===================================== @@ -1,5 +1,6 @@ Author: Tim Booth <[email protected]> Description: Remove wrong or fix perl interpreter location +Forwarded: no (upstream is dead) --- a/NAST-iEr/PerlLib/Fasta_reader.pm +++ b/NAST-iEr/PerlLib/Fasta_reader.pm ===================================== debian/patches/hardening.patch ===================================== @@ -1,6 +1,7 @@ Author: Andreas Tille <[email protected]> LastChanged: Tue, 04 Jun 2013 10:35:17 +0200 Description: Enable propagation of hardening options +Forwarded: no (upstream is dead) --- a/NAST-iEr/Makefile +++ b/NAST-iEr/Makefile ===================================== debian/patches/implicit-function.patch ===================================== @@ -0,0 +1,13 @@ +Description: Fix implicit declaration of function isprint +Bug-Debian: https://bugs.debian.org/1066532 +Author: Andreas Tille <[email protected]> +Last-Update: Wed, 10 Apr 2024 15:37:10 +0200 +Forwarded: no (upstream is dead) + +--- a/NAST-iEr/NAST-iEr.c ++++ b/NAST-iEr/NAST-iEr.c +@@ -1,3 +1,4 @@ ++#include <ctype.h> + #include <stdlib.h> + #include <stdio.h> + #include <string.h> ===================================== debian/patches/series ===================================== @@ -4,3 +4,4 @@ find_relocated_libraries.patch hardening.patch enable_tests_in_local_dir.patch cross.patch +implicit-function.patch ===================================== debian/source/lintian-overrides ===================================== @@ -0,0 +1,2 @@ +# See lintian bug #1017966 +microbiomeutil source: source-is-missing [docs/microbiomeutil.html] View it on GitLab: https://salsa.debian.org/med-team/microbiomeutil/-/compare/f076099590791da6fd3ce48e6fb86bd872afb994...4ca7571876e22784a4e901628c3b71e2b198a420 -- View it on GitLab: https://salsa.debian.org/med-team/microbiomeutil/-/compare/f076099590791da6fd3ce48e6fb86bd872afb994...4ca7571876e22784a4e901628c3b71e2b198a420 You're receiving this email because of your account on salsa.debian.org.
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