Étienne Mollier pushed to branch master at Debian Med / bioperl-run
Commits: 853b5d6c by Étienne Mollier at 2024-04-26T21:50:21+02:00 d/control: restrict emboss build-dependency. emboss is not available anymore on 32-bit and big endian architectures. It is thus not possible anymore to test it in such context. - - - - - 58eac63f by Étienne Mollier at 2024-04-26T21:52:06+02:00 d/control: demote bioperl-run recommends to suggestions. emboss, hmmer and infernal are currently not available on some release architectures. Demoting them helps getting the autodep8 perl test back on tracks at least on s390x. - - - - - f0384a77 by Étienne Mollier at 2024-04-27T08:00:13+02:00 d/control: demote tigr-glimmer to suggestion. - - - - - 1afec6cf by Étienne Mollier at 2024-04-27T10:39:05+02:00 d/control: also restrict tigr-glimmer build-deps architecture set. - - - - - 16f1a768 by Étienne Mollier at 2024-04-27T21:51:26+02:00 ready to upload to unstable. - - - - - 2 changed files: - debian/changelog - debian/control Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,17 @@ +bioperl-run (1.7.3-11) unstable; urgency=medium + + * d/control: restrict emboss build-dependency. + emboss is not available anymore on 32-bit and big endian architectures. + It is thus not possible anymore to test it in such context. + * d/control: demote bioperl-run recommends to suggestions. + emboss, hmmer and infernal are currently not available on some release + architectures. Demoting them helps getting the autodep8 perl test + back on tracks at least on s390x. + * d/control: demote tigr-glimmer to suggestion. + * d/control: also restrict tigr-glimmer build-deps architecture set. + + -- Étienne Mollier <[email protected]> Sat, 27 Apr 2024 21:48:57 +0200 + bioperl-run (1.7.3-10) unstable; urgency=medium * d/control: restrict some build-deps to amd64. ===================================== debian/control ===================================== @@ -34,7 +34,7 @@ Build-Depends-Indep: perl, bedtools-test, ncbi-blast+-legacy, clustalw [any-amd64], - emboss, + emboss [any-amd64 arm64 mips64el ppc64el riscv64], exonerate, hmmer [any-amd64 any-i386 powerpc ppc64], hyphy-pt | hyphy-mpi [any-amd64], @@ -51,7 +51,7 @@ Build-Depends-Indep: perl, raxml, samtools [any-amd64], sim4, - tigr-glimmer, + tigr-glimmer [any-amd64 arm64 mips64el ppc64el riscv64], wise, fasttree, lagan, @@ -82,10 +82,7 @@ Depends: ${misc:Depends}, Recommends: amap-align, ncbi-blast+-legacy, bwa, - emboss, exonerate, - hmmer, - infernal, kalign, maq, mafft, @@ -98,7 +95,6 @@ Recommends: amap-align, raxml, sim4, t-coffee, - tigr-glimmer, wise, lagan, pal2nal @@ -108,11 +104,15 @@ Suggests: gmap, bedtools, bowtie, clustalw, + emboss, + hmmer, hyphy-pt | hyphy-mpi, + infernal, libbio-tools-run-alignment-clustalw-perl, pftools, phyml, - samtools + samtools, + tigr-glimmer # gmap, fasta3, and trnascan-se is non-free # Removed from Debian at all: molphy, # Removed from Debian but might be reintroduced: ensembl, View it on GitLab: https://salsa.debian.org/med-team/bioperl-run/-/compare/61a3a7a674a41b9de418b0015726615954aeecdf...16f1a768366cc95e31c9582108f1811781127b76 -- View it on GitLab: https://salsa.debian.org/med-team/bioperl-run/-/compare/61a3a7a674a41b9de418b0015726615954aeecdf...16f1a768366cc95e31c9582108f1811781127b76 You're receiving this email because of your account on salsa.debian.org.
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