Author: osallou Date: 2012-06-22 10:40:41 +0000 (Fri, 22 Jun 2012) New Revision: 11434
Added: trunk/packages/biomaj/tags/1.2.0-6/ trunk/packages/biomaj/tags/1.2.0-6/debian/changelog trunk/packages/biomaj/tags/1.2.0-6/debian/control trunk/packages/biomaj/tags/1.2.0-6/debian/postrm Removed: trunk/packages/biomaj/tags/1.2.0-6/debian/changelog trunk/packages/biomaj/tags/1.2.0-6/debian/control trunk/packages/biomaj/tags/1.2.0-6/debian/postrm Log: [svn-buildpackage] Tagging biomaj 1.2.0-6 Deleted: trunk/packages/biomaj/tags/1.2.0-6/debian/changelog =================================================================== --- trunk/packages/biomaj/trunk/debian/changelog 2012-06-21 19:43:37 UTC (rev 11428) +++ trunk/packages/biomaj/tags/1.2.0-6/debian/changelog 2012-06-22 10:40:41 UTC (rev 11434) @@ -1,102 +0,0 @@ -biomaj (1.2.0-6) UNRELEASED; urgency=low - - [ Andreas Tille ] - * debian/upstream: Enhance upstream information (authors format, missing - fields) - - [Debconf translation updates] - * French (Olivier Sallou, proofread by the French l10n team). - - -- Andreas Tille <[email protected]> Tue, 08 May 2012 22:46:34 +0200 - -biomaj (1.2.0-5) unstable; urgency=low - - * Add missing file to package to get the console help (Closes: #658833) - - biomaj.install - - -- Olivier Sallou <[email protected]> Wed, 01 Feb 2012 10:00:03 +0100 - -biomaj (1.2.0-4) unstable; urgency=low - - * [Olivier Sallou] - * config: remove biomaj/jdk_home, not needed anymore - - * Debconf templates and debian/control reviewed by the debian-l10n- - english team as part of the Smith review project. Closes: #653408 - * [Debconf translation updates] - * Russian (Yuri Kozlov). Closes: #656111 - * Italian (Francesca Ciceri). Closes: #656254 - * French (Olivier Sallou). Closes: #656066 - * Czech (Michal Simunek). Closes: #656670 - * Dutch; (Jeroen Schot). Closes: #657009 - * German (Chris Leick). Closes: #657024 - * Danish (Joe Hansen). Closes: #657341 - * Indonesian (Mahyuddin Susanto). Closes: #657463 - * Spanish; (Camaleón). Closes: #657491 - * Polish (Michał Kułach). Closes: #657512 - * Swedish (Martin Bagge / brother). Closes: #657548 - * Portuguese (Miguel Figueiredo). Closes: #657664 - - - -- Olivier Sallou <[email protected]> Fri, 16 Dec 2011 15:53:10 +0100 - -biomaj (1.2.0-3) unstable; urgency=low - - * Add Portuguese translation for debconf (Closes: #651680) - - Thanks to Pedro Ribeiro <[email protected]> - - -- Olivier Sallou <[email protected]> Fri, 16 Dec 2011 09:25:22 +0100 - -biomaj (1.2.0-2) unstable; urgency=low - - * Fix Mysql dependency name. - - -- Olivier Sallou <[email protected]> Fri, 11 Nov 2011 10:25:39 +0100 - -biomaj (1.2.0-1) unstable; urgency=low - - * New upstream release with new features and bug fixes. - * Change in database model, migration script ran at install - * New post processes added in default install (emboss) - - -- Olivier Sallou <[email protected]> Thu, 18 Aug 2011 09:55:23 +0200 - -biomaj (1.1.0-3) unstable; urgency=low - - * Change priority in debconf message for jdk home - * Add spanish translation of debconf: - Thanks to Camaleón <[email protected]> - Closes: #632952 - * Add sweden translation of debconf: - Thanks to Martin Bagge <[email protected]> - Closes: #628927 - * Add german translation of debconf: - Thanks to Chris Leick <[email protected]> - Closes: #629455 - * Change openjdk dependency to add default-jdk and sun jdk possible depends - Closes: #633523 - - -- Olivier Sallou <[email protected]> Thu, 11 Jul 2011 09:55:23 +0200 - -biomaj (1.1.0-2) unstable; urgency=low - - * Add russian translation of debconf: - Thanks to Yuri Kozlov <[email protected]> - Closes: #623807 - * debian/patches/fix623558_remove_pid: - Remove unnecessary pid file creation - Closes: #623558 - * debian/postrm,debian/preinst: - Issue for smooth upgrade, require old package - removal then new package install - Closes: #624284 - - - -- Olivier Sallou <[email protected]> Fri, 22 Apr 2011 16:27:11 +0200 - -biomaj (1.1.0-1) unstable; urgency=low - - * Initial release (Closes: #609038) - First Debian package, fixed copyright file to list all licenses - - -- Olivier Sallou <[email protected]> Wed, 05 Jan 2011 10:39:00 +0100 Copied: trunk/packages/biomaj/tags/1.2.0-6/debian/changelog (from rev 11432, trunk/packages/biomaj/trunk/debian/changelog) =================================================================== --- trunk/packages/biomaj/tags/1.2.0-6/debian/changelog (rev 0) +++ trunk/packages/biomaj/tags/1.2.0-6/debian/changelog 2012-06-22 10:40:41 UTC (rev 11434) @@ -0,0 +1,105 @@ +biomaj (1.2.0-6) unstable; urgency=low + + [ Olivier Sallou ] + * Clean files for purge (Closes: #678490). + + [ Andreas Tille ] + * debian/upstream: Enhance upstream information (authors format, missing + fields) + + [Debconf translation updates] + * French (Olivier Sallou, proofread by the French l10n team). + + -- Olivier Sallou <[email protected]> Tue, 08 May 2012 22:46:34 +0200 + +biomaj (1.2.0-5) unstable; urgency=low + + * Add missing file to package to get the console help (Closes: #658833) + - biomaj.install + + -- Olivier Sallou <[email protected]> Wed, 01 Feb 2012 10:00:03 +0100 + +biomaj (1.2.0-4) unstable; urgency=low + + * [Olivier Sallou] + * config: remove biomaj/jdk_home, not needed anymore + + * Debconf templates and debian/control reviewed by the debian-l10n- + english team as part of the Smith review project. Closes: #653408 + * [Debconf translation updates] + * Russian (Yuri Kozlov). Closes: #656111 + * Italian (Francesca Ciceri). Closes: #656254 + * French (Olivier Sallou). Closes: #656066 + * Czech (Michal Simunek). Closes: #656670 + * Dutch; (Jeroen Schot). Closes: #657009 + * German (Chris Leick). Closes: #657024 + * Danish (Joe Hansen). Closes: #657341 + * Indonesian (Mahyuddin Susanto). Closes: #657463 + * Spanish; (Camaleón). Closes: #657491 + * Polish (Michał Kułach). Closes: #657512 + * Swedish (Martin Bagge / brother). Closes: #657548 + * Portuguese (Miguel Figueiredo). Closes: #657664 + + + -- Olivier Sallou <[email protected]> Fri, 16 Dec 2011 15:53:10 +0100 + +biomaj (1.2.0-3) unstable; urgency=low + + * Add Portuguese translation for debconf (Closes: #651680) + - Thanks to Pedro Ribeiro <[email protected]> + + -- Olivier Sallou <[email protected]> Fri, 16 Dec 2011 09:25:22 +0100 + +biomaj (1.2.0-2) unstable; urgency=low + + * Fix Mysql dependency name. + + -- Olivier Sallou <[email protected]> Fri, 11 Nov 2011 10:25:39 +0100 + +biomaj (1.2.0-1) unstable; urgency=low + + * New upstream release with new features and bug fixes. + * Change in database model, migration script ran at install + * New post processes added in default install (emboss) + + -- Olivier Sallou <[email protected]> Thu, 18 Aug 2011 09:55:23 +0200 + +biomaj (1.1.0-3) unstable; urgency=low + + * Change priority in debconf message for jdk home + * Add spanish translation of debconf: + Thanks to Camaleón <[email protected]> + Closes: #632952 + * Add sweden translation of debconf: + Thanks to Martin Bagge <[email protected]> + Closes: #628927 + * Add german translation of debconf: + Thanks to Chris Leick <[email protected]> + Closes: #629455 + * Change openjdk dependency to add default-jdk and sun jdk possible depends + Closes: #633523 + + -- Olivier Sallou <[email protected]> Thu, 11 Jul 2011 09:55:23 +0200 + +biomaj (1.1.0-2) unstable; urgency=low + + * Add russian translation of debconf: + Thanks to Yuri Kozlov <[email protected]> + Closes: #623807 + * debian/patches/fix623558_remove_pid: + Remove unnecessary pid file creation + Closes: #623558 + * debian/postrm,debian/preinst: + Issue for smooth upgrade, require old package + removal then new package install + Closes: #624284 + + + -- Olivier Sallou <[email protected]> Fri, 22 Apr 2011 16:27:11 +0200 + +biomaj (1.1.0-1) unstable; urgency=low + + * Initial release (Closes: #609038) + First Debian package, fixed copyright file to list all licenses + + -- Olivier Sallou <[email protected]> Wed, 05 Jan 2011 10:39:00 +0100 Deleted: trunk/packages/biomaj/tags/1.2.0-6/debian/control =================================================================== --- trunk/packages/biomaj/trunk/debian/control 2012-06-21 19:43:37 UTC (rev 11428) +++ trunk/packages/biomaj/tags/1.2.0-6/debian/control 2012-06-22 10:40:41 UTC (rev 11434) @@ -1,44 +0,0 @@ -Source: biomaj -Section: science -Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Olivier Sallou <[email protected]> -DM-Upload-Allowed: yes -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/biomaj/trunk/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biomaj/trunk/ -Homepage: http://biomaj.genouest.org -Build-Depends: debhelper (>= 7.1) -Build-Depends-Indep: debconf, po-debconf, openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libhsqldb-java, ant-contrib, - liblog4j1.2-java, libcommons-net2-java, libcommons-dbcp-java, libgnumail-java, libcommons-pool-java, - libgnujaf-java, libjgoodies-forms-java, liboro-java, libregexp-java, - libjcommon-java, libjsch-java, libjdom1-java, junit4, libsaxonb-java, libjdepend-java, - javahelper (>=0.25), libcommons-cli-java, libcommons-codec-java, libcommons-httpclient-java, libcommons-logging-java, - libjets3t-java -Standards-Version: 3.9.2 - -Package: biomaj -Architecture: all -Depends: ${misc:Depends}, ${java:Depends}, - openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libmysql-java, debconf, - libhsqldb-java,ant-contrib,liblog4j1.2-java,libcommons-net2-java (>= 2.2),libcommons-dbcp-java (>= 1.2), - libgnumail-java, libcommons-pool-java (>= 1.5), libgnujaf-java, libjgoodies-forms-java (>= 1.2), - liboro-java (>= 2.0),libregexp-java (>= 1.4),libjcommon-java (>= 1.0),libjsch-java (>= 0.1.42), - libjdom1-java (>= 1.1),junit4,libsaxonb-java (>= 0.9), libcommons-cli-java, libcommons-codec-java, - libcommons-httpclient-java, libcommons-logging-java,libjets3t-java, perl, - mysql-server -Suggests: ncbi-tools-bin, blast2 -Description: biological data-bank updater - BioMAJ downloads remote data banks, checks their status and applies - transformation workflows, with consistent state, to provide ready-to-use - data for biologists and bioinformaticians. For example, it can transform - original FASTA files into BLAST indexes. It is very flexible and its - post-processing facilities can be extended very easily. - -Package: biomaj-properties -Architecture: all -Depends: ${misc:Depends} -Description: biological data-bank updater - example properties files - This package contains a set of data bank properties files that can be - used as examples for BioMAJ. It contains descriptions for many existing - data banks with or without workflows to transform data. Some files may - require additional programs (such as BLAST) for post-processing. Copied: trunk/packages/biomaj/tags/1.2.0-6/debian/control (from rev 11433, trunk/packages/biomaj/trunk/debian/control) =================================================================== --- trunk/packages/biomaj/tags/1.2.0-6/debian/control (rev 0) +++ trunk/packages/biomaj/tags/1.2.0-6/debian/control 2012-06-22 10:40:41 UTC (rev 11434) @@ -0,0 +1,44 @@ +Source: biomaj +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Olivier Sallou <[email protected]> +DM-Upload-Allowed: yes +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/biomaj/trunk/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biomaj/trunk/ +Homepage: http://biomaj.genouest.org +Build-Depends: debhelper (>= 7.1) +Build-Depends-Indep: debconf, po-debconf, openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libhsqldb-java, ant-contrib, + liblog4j1.2-java, libcommons-net2-java, libcommons-dbcp-java, libgnumail-java, libcommons-pool-java, + libgnujaf-java, libjgoodies-forms-java, liboro-java, libregexp-java, + libjcommon-java, libjsch-java, libjdom1-java, junit4, libsaxonb-java, libjdepend-java, + javahelper (>=0.25), libcommons-cli-java, libcommons-codec-java, libcommons-httpclient-java, libcommons-logging-java, + libjets3t-java +Standards-Version: 3.9.3 + +Package: biomaj +Architecture: all +Depends: ${misc:Depends}, ${java:Depends}, + openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libmysql-java, debconf, + libhsqldb-java,ant-contrib,liblog4j1.2-java,libcommons-net2-java (>= 2.2),libcommons-dbcp-java (>= 1.2), + libgnumail-java, libcommons-pool-java (>= 1.5), libgnujaf-java, libjgoodies-forms-java (>= 1.2), + liboro-java (>= 2.0),libregexp-java (>= 1.4),libjcommon-java (>= 1.0),libjsch-java (>= 0.1.42), + libjdom1-java (>= 1.1),junit4,libsaxonb-java (>= 0.9), libcommons-cli-java, libcommons-codec-java, + libcommons-httpclient-java, libcommons-logging-java,libjets3t-java, perl, + mysql-server +Suggests: ncbi-tools-bin, blast2 +Description: biological data-bank updater + BioMAJ downloads remote data banks, checks their status and applies + transformation workflows, with consistent state, to provide ready-to-use + data for biologists and bioinformaticians. For example, it can transform + original FASTA files into BLAST indexes. It is very flexible and its + post-processing facilities can be extended very easily. + +Package: biomaj-properties +Architecture: all +Depends: ${misc:Depends} +Description: biological data-bank updater - example properties files + This package contains a set of data bank properties files that can be + used as examples for BioMAJ. It contains descriptions for many existing + data banks with or without workflows to transform data. Some files may + require additional programs (such as BLAST) for post-processing. Deleted: trunk/packages/biomaj/tags/1.2.0-6/debian/postrm =================================================================== --- trunk/packages/biomaj/trunk/debian/postrm 2012-06-21 19:43:37 UTC (rev 11428) +++ trunk/packages/biomaj/tags/1.2.0-6/debian/postrm 2012-06-22 10:40:41 UTC (rev 11434) @@ -1,29 +0,0 @@ -#!/bin/sh - -set -e - -# Source debconf library. -. /usr/share/debconf/confmodule - -case "$1" in - purge) - # Remove all - if [ -e /usr/share/biomaj ]; then - rm -rf /usr/share/biomaj - fi - echo "Warning, BioMAJ database for MySQL is not deleted by process removal." - ;; - remove|upgrade|failed-upgrade|abort-install|disappear) - echo "Warning, BioMAJ database for MySQL is not deleted by process removal." ;; - abort-upgrade) - ;; - *) - echo "postrm called with unknown argument \`$1'" >&2 - exit 1 - ;; -esac - - - -#DEBHELPER# - Copied: trunk/packages/biomaj/tags/1.2.0-6/debian/postrm (from rev 11431, trunk/packages/biomaj/trunk/debian/postrm) =================================================================== --- trunk/packages/biomaj/tags/1.2.0-6/debian/postrm (rev 0) +++ trunk/packages/biomaj/tags/1.2.0-6/debian/postrm 2012-06-22 10:40:41 UTC (rev 11434) @@ -0,0 +1,33 @@ +#!/bin/sh + +set -e + +# Source debconf library. +. /usr/share/debconf/confmodule + +case "$1" in + purge) + # Remove generated data and migration info + if [ -e /var/lib/biomaj ]; then + rm -rf /var/lib/biomaj + fi + # Remove all + if [ -e /usr/share/biomaj ]; then + rm -rf /usr/share/biomaj + fi + echo "Warning, BioMAJ database for MySQL is not deleted by process removal." + ;; + remove|upgrade|failed-upgrade|abort-install|disappear) + echo "Warning, BioMAJ database for MySQL is not deleted by process removal." ;; + abort-upgrade) + ;; + *) + echo "postrm called with unknown argument \`$1'" >&2 + exit 1 + ;; +esac + + + +#DEBHELPER# + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
