Étienne Mollier pushed to branch master at Debian Med / gffread
Commits: 35f114ee by Étienne Mollier at 2024-06-20T20:41:51+02:00 Revert "d/t/*: work around uninstallable packages." This reverts commit 7f28a236e8757d9fce7af87b806e38ddcb61a9b2, brought in the previous package upload. Quoting Adrian: trinityrnaseq is back in testing, and boost now defaults to 1.83. Closes: #1073921 Thanks: Adrian Bunk - - - - - 88b90b60 by Étienne Mollier at 2024-06-20T20:45:39+02:00 d/control: declare compliance to standards version 4.7.0. - - - - - b178b480 by Étienne Mollier at 2024-06-20T20:51:46+02:00 d/control: add myself to uploaders. - - - - - f86cecfd by Étienne Mollier at 2024-06-20T20:52:11+02:00 ready to upload to unstable. - - - - - 4 changed files: - debian/changelog - debian/control - debian/tests/control - debian/tests/run-tests Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,15 @@ +gffread (0.12.7-5) unstable; urgency=medium + + * Revert "d/t/*: work around uninstallable packages." + This reverts commit 7f28a236e8757d9fce7af87b806e38ddcb61a9b2, brought + in the previous package upload. Quoting Adrian: trinityrnaseq is back + in testing, and boost now defaults to 1.83. + Thanks to Adrian Bunk (Closes: #1073921) + * d/control: declare compliance to standards version 4.7.0. + * d/control: add myself to uploaders. + + -- Étienne Mollier <[email protected]> Thu, 20 Jun 2024 20:52:03 +0200 + gffread (0.12.7-4) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -2,12 +2,13 @@ Source: gffread Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]>, Michael R. Crusoe <[email protected]>, - Steffen Moeller <[email protected]> + Steffen Moeller <[email protected]>, + Étienne Mollier <[email protected]> Section: science Priority: optional Build-Depends: debhelper-compat (= 13), libgclib-dev -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/gffread Vcs-Git: https://salsa.debian.org/med-team/gffread.git Homepage: https://ccb.jhu.edu/software/stringtie/gff.shtml ===================================== debian/tests/control ===================================== @@ -1,6 +1,3 @@ Tests: run-tests -# FIXME: put back trinityrnaseq-examples when available in testing. -# FIXME: put back r-bioc-gviz, r-bioc-genomicfeatures, r-bioc-rhtslib -# and r-bioc-rtracklayer, when boost 1.81 transition is ended. -Depends: gffread, bash, augustus-doc, bedtools-test, cnvkit [amd64 arm64 ppc64el], emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, optimir [amd64 arm64 ppc64el], proteinortho [amd64 arm64 ppc64el s390x], python3-gffutils, python3-pybedtools [amd64 arm64 ppc64el], seqan-apps, spades [amd64], dpkg-dev +Depends: gffread, bash, augustus-doc, bedtools-test, cnvkit [amd64 arm64 ppc64el], emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, optimir [amd64 arm64 ppc64el], proteinortho [amd64 arm64 ppc64el s390x], python3-gffutils, python3-pybedtools [amd64 arm64 ppc64el], r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, spades [amd64], trinityrnaseq-examples, dpkg-dev Restrictions: allow-stderr ===================================== debian/tests/run-tests ===================================== @@ -10,10 +10,7 @@ cd "$AUTOPKGTEST_TMP" # generated via # apt-file search --package-only --regexp '\.gff.?$' | grep -v -E "bedops|cct|ugene|gbrowse-data" -# FIXME: put back trinityrnaseq-examples when available in testing. -# FIXME: put back r-bioc-gviz, r-bioc-genomicfeatures, r-bioc-rhtslib, -# r-bioc-rtracklayer when boost 1.81 transition is ended. -PACKAGES="augustus-doc, bedtools-test, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, python3-gffutils, seqan-apps" +PACKAGES="augustus-doc, bedtools-test, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, python3-gffutils, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, trinityrnaseq-examples" if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "amd64" ] ; then PACKAGES+=", cnvkit, optimir, proteinortho, python3-pybedtools, spades" View it on GitLab: https://salsa.debian.org/med-team/gffread/-/compare/be85c58433aa62a1e7754fd5420b5a969df493be...f86cecfdb23fd716e57eef4979d80d74bf513069 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/gffread/-/compare/be85c58433aa62a1e7754fd5420b5a969df493be...f86cecfdb23fd716e57eef4979d80d74bf513069 You're receiving this email because of your account on salsa.debian.org.
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