Michael R. Crusoe pushed to branch master at Debian Med / gffread
Commits: 9445afc7 by Michael R. Crusoe at 2024-07-09T13:19:31+02:00 d/tests: adjust architecture lists, enable more testing with riscv64 - - - - - 3 changed files: - debian/changelog - debian/tests/control - debian/tests/run-tests Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +gffread (0.12.7-6) unstable; urgency=medium + + * d/tests: adjust architecture lists, enable more testing with riscv64 + + -- Michael R. Crusoe <[email protected]> Tue, 09 Jul 2024 13:19:28 +0200 + gffread (0.12.7-5) unstable; urgency=medium * Revert "d/t/*: work around uninstallable packages." ===================================== debian/tests/control ===================================== @@ -1,3 +1,3 @@ Tests: run-tests -Depends: gffread, bash, augustus-doc, bedtools-test, cnvkit [amd64 arm64 ppc64el], emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, optimir [amd64 arm64 ppc64el], proteinortho [amd64 arm64 ppc64el s390x], python3-gffutils, python3-pybedtools [amd64 arm64 ppc64el], r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, spades [amd64], trinityrnaseq-examples, dpkg-dev +Depends: gffread, bash, augustus-doc, bedtools-test, cnvkit, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, optimir [amd64 arm64 ppc64el riscv64], proteinortho [amd64 arm64 ppc64el riscv64 s390x], python3-gffutils, python3-pybedtools [amd64 arm64 ppc64el riscv64], r-bioc-genomicfeatures [amd64 arm64 ppc64el riscv64 s390x], r-bioc-gviz [amd64 arm64 ppc64el riscv64 s390x], r-bioc-rhtslib [amd64 arm64 ppc64el riscv64 s390x], r-bioc-rtracklayer [amd64 arm64 ppc64el riscv64 s390x], seqan-apps [amd64 arm64 ppc64el riscv64 s390x], spades [amd64], trinityrnaseq-examples [amd64 arm64 ppc64el riscv64], dpkg-dev Restrictions: allow-stderr ===================================== debian/tests/run-tests ===================================== @@ -10,22 +10,26 @@ cd "$AUTOPKGTEST_TMP" # generated via # apt-file search --package-only --regexp '\.gff.?$' | grep -v -E "bedops|cct|ugene|gbrowse-data" -PACKAGES="augustus-doc, bedtools-test, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, python3-gffutils, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, trinityrnaseq-examples" +PACKAGES="augustus-doc, bedtools-test, cnvkit, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, python3-gffutils" if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "amd64" ] ; then - PACKAGES+=", cnvkit, optimir, proteinortho, python3-pybedtools, spades" + PACKAGES+=", optimir, proteinortho, python3-pybedtools, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, spades, trinityrnaseq-examples" fi if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "arm64" ] ; then - PACKAGES+=", cnvkit, optimir, proteinortho, python3-pybedtools" + PACKAGES+=", optimir, proteinortho, python3-pybedtools, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, trinityrnaseq-examples" fi if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "ppc64el" ] ; then - PACKAGES+=", cnvkit, optimir, proteinortho, python3-pybedtools" + PACKAGES+=", optimir, proteinortho, python3-pybedtools, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, trinityrnaseq-examples" +fi + +if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "riscv64" ] ; then + PACKAGES+=", optimir, proteinortho, python3-pybedtools, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, trinityrnaseq-examples" fi if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "s390x" ] ; then - PACKAGES+=", proteinortho" + PACKAGES+=", proteinortho, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps" fi IFS=", " read -r -a pkgs <<< ${PACKAGES} View it on GitLab: https://salsa.debian.org/med-team/gffread/-/commit/9445afc7be984feca1334e366bc77675469ed887 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/gffread/-/commit/9445afc7be984feca1334e366bc77675469ed887 You're receiving this email because of your account on salsa.debian.org.
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