Étienne Mollier pushed to branch master at Debian Med / python-skbio
Commits: d28f940f by Étienne Mollier at 2024-07-10T21:35:50+02:00 fix-test_shannon.patch: new: relax floating point comparison. Closes: #1074745 - - - - - 82bcfcee by Étienne Mollier at 2024-07-10T21:37:12+02:00 d/control: add myself to uploaders. - - - - - 756d9f21 by Étienne Mollier at 2024-07-10T21:37:35+02:00 d/control: declare compliance to standards version 4.7.0. - - - - - dacd70c8 by Étienne Mollier at 2024-07-10T21:38:29+02:00 ready to upload to unstable. - - - - - 4 changed files: - debian/changelog - debian/control - + debian/patches/fix-test_shannon.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,12 @@ +python-skbio (0.6.1-3) unstable; urgency=medium + + * fix-test_shannon.patch: new: relax floating point comparison. + (Closes: #1074745) + * d/control: add myself to uploaders. + * d/control: declare compliance to standards version 4.7.0. + + -- Étienne Mollier <[email protected]> Wed, 10 Jul 2024 21:38:07 +0200 + python-skbio (0.6.1-2) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -1,7 +1,8 @@ Source: python-skbio Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]>, - Kevin Murray <[email protected]> + Kevin Murray <[email protected]>, + Étienne Mollier <[email protected]> Section: python Priority: optional Build-Depends: debhelper-compat (= 13), @@ -37,7 +38,7 @@ Build-Depends-Indep: python3-sphinx <!nodoc>, python-biom-format-doc <!nodoc>, python-pandas-doc <!nodoc>, python-numpy-doc <!nodoc> -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-skbio Vcs-Git: https://salsa.debian.org/med-team/python-skbio.git Homepage: https://github.com/biocore/scikit-bio ===================================== debian/patches/fix-test_shannon.patch ===================================== @@ -0,0 +1,19 @@ +Description: relax precision on floating point number comparison. + +Author: Étienne Mollier <[email protected]> +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1074745 +Forwarded: https://github.com/scikit-bio/scikit-bio/commit/edf4286dd8f69445e400fd1f2c3bacc7c5cd3f0b +Last-Update: 2024-07-10 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- python-skbio.orig/skbio/diversity/alpha/tests/test_base.py ++++ python-skbio/skbio/diversity/alpha/tests/test_base.py +@@ -316,7 +316,7 @@ + self.assertAlmostEqual(shannon([1, 2, 3, 4], exp=True), 3.596115467) + + # Equally abundant taxa, exp(H) = # taxa +- self.assertEqual(shannon([5, 5, 5], exp=True), 3.0) ++ self.assertAlmostEqual(shannon([5, 5, 5], exp=True), 3.0) + + def test_simpson(self): + self.assertAlmostEqual(simpson(np.array([1, 0, 2, 5, 2])), 0.66) ===================================== debian/patches/series ===================================== @@ -9,3 +9,4 @@ numpy-1.24.patch python3.12-xfail-tests.patch cython3.patch docs-no-version-switch +fix-test_shannon.patch View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/fbdb51493fae90ed010fcfc6e5057d41267ec59e...dacd70c8cf55b11327fa24900ed1d8654fbdb05d -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/fbdb51493fae90ed010fcfc6e5057d41267ec59e...dacd70c8cf55b11327fa24900ed1d8654fbdb05d You're receiving this email because of your account on salsa.debian.org.
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