Aaron M. Ucko pushed to branch master at Debian Med / ncbi-blastplus
Commits: 67807fe0 by Aaron M. Ucko at 2024-07-17T21:22:59-04:00 New upstream version 2.15.0+ds - - - - - fbfbf2ee by Aaron M. Ucko at 2024-07-17T21:28:39-04:00 Merge tag 'upstream/2.15.0+ds' (#1074316). Upstream version 2.15.0(+ds) should be (more than) new enough for recent q2-feature-classifier, which merely needs at least 2.13. - - - - - abe67c72 by Aaron M. Ucko at 2024-07-17T21:39:29-04:00 d/patches: Update for new release (2.15.0[+ds]), mostly formally. - - - - - c492f265 by Aaron M. Ucko at 2024-07-22T23:20:45-04:00 BDA on libnghttp2-dev, libsqlite3-dev, and libuv1-dev, newly needed. - - - - - 135c5cbd by Aaron M. Ucko at 2024-07-22T23:29:52-04:00 Move debian/patches/system_mbedtls_only up and extend it. * debian/patches/series: Move system_mbedtls_only up in conjunction with incorporating part of an upstream patch needed by support_mbedtls3. * debian/patches/system_mbedtls: Extend to cover ncbi_mbedtls.c (as in https://github.com/ncbi/ncbi-cxx-toolkit-public/commit/f9c7297dd1) and Makefile.xxconnect2.lib. - - - - - a3d3e495 by Aaron M. Ucko at 2024-07-22T23:30:47-04:00 d/p/support_mbedtls3 (new): Support Mbed TLS 3.x (#1075867). Don't specifically require it, though. - - - - - f9d97278 by Aaron M. Ucko at 2024-07-22T23:30:56-04:00 Regenerate configure and config.h.in with Autoconf 2.69. To that end, add a B-D on autoconf2.69. - - - - - bdc3fc7f by Aaron M. Ucko at 2024-07-22T23:31:22-04:00 Make it possible to build against PCRE2, and do so (#891197). * debian/control: Build against libpcre2-dev. * debian/patches/allow_pcre2 (new): Allow use of PCRE2. * debian/rules: Build against PCRE2. - - - - - 8f6aa0b1 by Aaron M. Ucko at 2024-07-22T23:31:32-04:00 Refresh patches after prepending allow_pcre2 and support_mbedtls3. - - - - - ad520e4e by Aaron M. Ucko at 2024-07-22T23:31:32-04:00 debian/rules: Add --without-strip, disable reproducible=timeless. Tune flags: Add --without-strip to make --with-symbols effective; switch off warnings from __DATE__/__TIME__ usage, since dpkg-buildpackage's SOURCE_DATE_EPOCH injection should suffice. - - - - - e016e597 by Aaron M. Ucko at 2024-07-22T23:32:00-04:00 debian/patches/series: Comment out reprobuild (overkill). I'm all for reproducibility, but the package already automatically builds with flags that make __FILE__ relative, and many of its uses are in header-defined macros that intend to pick up their callers' paths. - - - - - a1513d3e by Aaron M. Ucko at 2024-07-22T23:32:03-04:00 debian/rules: Extend generated-sources cleanup to objtools/eutils. Not entirely straightforward due to input format variation. - - - - - 6bdc2344 by Aaron M. Ucko at 2024-07-22T23:32:03-04:00 debian/source/lintian-overrides: No more rapidjson10 (just ...11). - - - - - a9e68c34 by Aaron M. Ucko at 2024-07-25T20:00:49-04:00 Stop relying on 2to3 at build time. * debian/control: Stop building against 2to3, which may not be around much longer. * debian/patches/allow_pcre2 (new): Allow use of PCRE2. * debian/rules: Drop build-time 2to3 invocation in favor of debian/patches/2to3. - - - - - e69e9a2f by Aaron M. Ucko at 2024-07-25T20:02:52-04:00 New upstream version 2.16.0+ds - - - - - e5d75ace by Aaron M. Ucko at 2024-07-25T20:40:28-04:00 Merge tag 'upstream/2.16.0+ds' Upstream version 2.16.0(+ds). - - - - - 4678cd3f by Aaron M. Ucko at 2024-07-25T20:41:04-04:00 routine-update: Standards-Version: 4.7.0 - - - - - 19a32770 by Aaron M. Ucko at 2024-07-25T20:41:15-04:00 Update patches again for 2.16.0(+ds). - - - - - 1411bc81 by Aaron M. Ucko at 2024-07-25T20:41:31-04:00 Finalize ncbi-blast+ 2.16.0+ds-1 for unstable. - - - - - 30 changed files: - c++/compilers/cygwin/build.sh - c++/compilers/unix/GCC.sh - c++/compilers/unix/ICC.sh - c++/compilers/unix/Xcode.sh - − c++/compilers/vs2017/Makefile.WinMain.app.msvc - − c++/compilers/vs2017/Makefile.wxWidgets.app.msvc - − c++/compilers/vs2017/build.sh - − c++/compilers/vs2017/build_exec.bat - − c++/compilers/vs2017/build_util.sh - − c++/compilers/vs2017/check.sh - − c++/compilers/vs2017/configure.bat - − c++/compilers/vs2017/datatool.bat - − c++/compilers/vs2017/dll/build/UtilityProjects/_CONFIGURE_.vcxproj - − c++/compilers/vs2017/dll/build/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj - − c++/compilers/vs2017/dll/build/UtilityProjects/configure._ - − c++/compilers/vs2017/dll/build/UtilityProjects/configure_dialog._ - − c++/compilers/vs2017/dll/build/all.bat - − c++/compilers/vs2017/dll/build/all_gbench.bat - − c++/compilers/vs2017/dll/build/all_gui.bat - − c++/compilers/vs2017/dll/build/all_ncbi.bat - − c++/compilers/vs2017/dll/build/gbench/UtilityProjects/_CONFIGURE_.vcxproj - − c++/compilers/vs2017/dll/build/gbench/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj - − c++/compilers/vs2017/dll/build/gbench/UtilityProjects/configure._ - − c++/compilers/vs2017/dll/build/gbench/UtilityProjects/configure_dialog._ - − c++/compilers/vs2017/dll/build/gbench/configure_prebuild.bat - − c++/compilers/vs2017/dll/build/gbench/gbench_install/gbench-install.vcxproj - − c++/compilers/vs2017/dll/build/gbench/ncbi_gbench.sln - − c++/compilers/vs2017/dll/build/gui/UtilityProjects/_CONFIGURE_.vcxproj - − c++/compilers/vs2017/dll/build/gui/UtilityProjects/_CONFIGURE_DIALOG_.vcxproj - − c++/compilers/vs2017/dll/build/gui/UtilityProjects/configure._ The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/77519daef0c13c73c6ad8b1d9a4a7dfe48cc97d1...1411bc81806aad716ae2e204821a73378587bf88 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/77519daef0c13c73c6ad8b1d9a4a7dfe48cc97d1...1411bc81806aad716ae2e204821a73378587bf88 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
