Rebecca N. Palmer pushed to branch debian-v7 at Debian Med / snakemake
Commits: 0bdd4edf by Rebecca N. Palmer at 2024-08-05T07:35:14+01:00 Tests: ignore nocheck to get a log on riscv64. - - - - - 3 changed files: - debian/changelog - debian/control - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +snakemake (7.32.4-4+ppa2) UNRELEASED; urgency=medium + + * Tests: ignore nocheck to get a log on riscv64. + + -- Rebecca N. Palmer <[email protected]> Mon, 05 Aug 2024 07:34:15 +0100 + snakemake (7.32.4-4+ppa1) unstable; urgency=medium * fail tests to get a log, extra debug output ===================================== debian/control ===================================== @@ -12,35 +12,35 @@ Build-Depends: ca-certificates, glpk-utils [amd64], imagemagick, python3, - python3-platformdirs <!nocheck>, - python3-biopython <!nocheck>, - python3-boto3 <!nocheck>, - python3-botocore <!nocheck>, + python3-platformdirs, + python3-biopython, + python3-boto3, + python3-botocore, python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, - python3-dropbox <!nocheck>, - python3-flask <!nocheck>, + python3-dropbox, + python3-flask, python3-git, python3-jinja2 (>= 3.0~), python3-jsonschema, python3-nbformat, python3-packaging, - python3-pandas <!nocheck>, + python3-pandas, python3-pkg-resources, python3-psutil, python3-pulp (>= 2.0~), - python3-pygments <!nocheck>, - python3-pytest <!nocheck>, - python3-pytools <!nocheck>, + python3-pygments, + python3-pytest, + python3-pytools, python3-ratelimiter, python3-recommonmark <!nodoc>, python3-requests, - python3-requests-mock <!nocheck>, + python3-requests-mock, python3-retry, - python3-pytest-mock <!nocheck>, - python3-rpy2 <!nocheck>, + python3-pytest-mock, + python3-rpy2, python3-setuptools, python3-smart-open (>= 3.0~), python3-sphinx (>= 3.0~) <!nodoc>, @@ -49,13 +49,13 @@ Build-Depends: ca-certificates, python3-sphinx-rtd-theme <!nodoc>, python3-stopit, python3-tabulate, - python3-throttler <!nocheck>, - python3-toposort <!nocheck>, + python3-throttler, + python3-toposort, python3-wrapt, python3-yaml, - python3-yte <!nocheck>, + python3-yte, r-cran-rmarkdown, - stress <!nocheck> + stress Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/snakemake Vcs-Git: https://salsa.debian.org/med-team/snakemake.git ===================================== debian/rules ===================================== @@ -51,7 +51,8 @@ export SPHINXBUILD=/usr/share/sphinx/scripts/python3/sphinx-build execute_after_dh_auto_build: PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) \ cd docs && LC_ALL=C.UTF-8 LANGUAGE=C.UTF-8 make html - . /etc/profile.d/modules.sh && PYBUILD_SYSTEM=custom dh_auto_test || true + chmod +x debian/output/source_dir/bin/snakemake; cp -r debian/output/source_dir/bin debian/output/source_dir/tests debian/output/source_dir/.pybuild/cpython3_3.12_snakemake/build + . /etc/profile.d/modules.sh && python3.12 -m pytest -o faulthandler_timeout=60 -v debian/output/source_dir/.pybuild/cpython3_3.12_snakemake/build/tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_deploy_hashing and not test_peppy and not test_modules_peppy and not test_report_display_code and not test_wrapper_local_git_prefix and not test_github_issue1396 and not test_az_batch_executor and not test_modules_prefix and not test_ancient and not test_github_issue1062 and not test_symlink_time_handling and not test_env_modules and not test_github_issue1460 and not test_rule_inheritance_globals and not test_prebuilt_conda_script and not test_persistent_dict and not test_issue328' || true execute_after_dh_installdocs: find debian -name '__pycache__' -o name '.gitignore' | xargs rm -rf View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/commit/0bdd4edf85dac13f42b30fb4832f746fdd486036 -- View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/commit/0bdd4edf85dac13f42b30fb4832f746fdd486036 You're receiving this email because of your account on salsa.debian.org.
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