Étienne Mollier pushed to branch master at Debian Med / python-biopython
Commits: d38f43d9 by Étienne Mollier at 2024-09-14T11:47:11+02:00 d/watch: fix debian version mangling. - - - - - 4a5d63e7 by Étienne Mollier at 2024-09-14T11:48:16+02:00 New upstream version 1.84+dfsg - - - - - a8887e24 by Étienne Mollier at 2024-09-14T11:58:00+02:00 Merge branch 'upstream' - - - - - be0e1606 by Étienne Mollier at 2024-09-14T11:58:40+02:00 d/copyright: update copyright years. - - - - - 6248abec by Étienne Mollier at 2024-09-14T12:00:24+02:00 fix-use-of-unversioned-python.patch: delete: hunk removed upstream. - - - - - 2abaff1e by Étienne Mollier at 2024-09-14T12:02:26+02:00 reproduciblebuild.patch: delete: file disappeared upstream. - - - - - 5d729260 by Étienne Mollier at 2024-09-14T12:08:16+02:00 croak-on-muscle5.patch: refresh. - - - - - 711f1fbd by Étienne Mollier at 2024-09-14T12:08:37+02:00 muscle3.patch: unfuzz. - - - - - 09ca1331 by Étienne Mollier at 2024-09-14T12:10:56+02:00 seqxml-parser.patch: delete: issue fixed upstream. - - - - - f4184228 by Étienne Mollier at 2024-09-14T12:11:14+02:00 skip-scipy-in-codonalign.patch: unfuzz. - - - - - bafb48c7 by Étienne Mollier at 2024-09-14T14:51:35+02:00 d/rules: condensate dh_installdocs target to ease readability. - - - - - c76a6578 by Étienne Mollier at 2024-09-14T14:53:51+02:00 d/rules: cleanup irrelevant comments and more readable dh_auto_test. - - - - - 462d9c90 by Étienne Mollier at 2024-09-14T15:02:06+02:00 d/t/run-unit-test: Tutorial.tex does not exist anymore. - - - - - 22b05914 by Étienne Mollier at 2024-09-14T15:02:53+02:00 d/t/run-unit-test: new PDB tests require compressed bcif files. - - - - - 86e7d8ee by Étienne Mollier at 2024-09-14T15:03:54+02:00 d/rules: replace distclean target by clean in Doc/. - - - - - 6f93fe90 by Étienne Mollier at 2024-09-14T16:06:26+02:00 d/control: documentation now depends on Sphinx and side modules. - - - - - 912fadc5 by Étienne Mollier at 2024-09-14T16:07:37+02:00 d/rules: explicitly make html documentation. - - - - - 331a327b by Étienne Mollier at 2024-09-14T16:08:28+02:00 Update changelog - - - - - cb2f9540 by Étienne Mollier at 2024-09-14T16:14:48+02:00 Merge branch 'master' of salsa.debian.org:med-team/python-biopython - - - - - 13a67107 by Étienne Mollier at 2024-09-14T16:32:08+02:00 d/copyright: do not advertise LGPL since it is not in use. - - - - - e1d188af by Étienne Mollier at 2024-09-14T22:26:25+02:00 d/rules: cleanup documentation from embeding and privacy breaches. - - - - - 3c64ce3c by Étienne Mollier at 2024-09-14T22:29:57+02:00 d/control: documentation depends on libjs-sphinx and libjs-jquery. - - - - - 1bd6829b by Étienne Mollier at 2024-09-14T22:31:15+02:00 d/python-biopython-doc.docs: install sphinx html artifacts. - - - - - 6136c968 by Étienne Mollier at 2024-09-14T22:31:54+02:00 d/python-biopython-doc.doc-base: update location of the Tutorial. - - - - - 43db061d by Étienne Mollier at 2024-09-14T22:33:13+02:00 d/python-biopython-doc.examples: new: install examples. - - - - - 49c55caf by Étienne Mollier at 2024-09-14T22:33:52+02:00 d/python-biopython-doc.lintian-overrides: flag another empty test file. - - - - - b5f78be7 by Étienne Mollier at 2024-09-14T22:35:15+02:00 Ready for upload to experimental. - - - - - 30 changed files: - .appveyor.yml - .circleci/config.yml - .circleci/requirements-sphinx.txt - − .codecov.yml - .flake8 - .github/deploy_docs.sh - .github/workflows/ci.yml - .gitignore - .mypy.ini - .pre-commit-config.yaml - Bio/Affy/CelFile.py - Bio/Align/AlignInfo.py - Bio/Align/Applications/_ClustalOmega.py - Bio/Align/Applications/_Clustalw.py - Bio/Align/Applications/_Dialign.py - Bio/Align/Applications/_MSAProbs.py - Bio/Align/Applications/_Mafft.py - Bio/Align/Applications/_Muscle.py - Bio/Align/Applications/_Prank.py - Bio/Align/Applications/_Probcons.py - Bio/Align/Applications/_TCoffee.py - Bio/Align/Applications/__init__.py - Bio/Align/__init__.py - + Bio/Align/_aligncore.c - Bio/Align/_pairwisealigner.c - Bio/Align/a2m.py - Bio/Align/analysis.py - Bio/Align/bed.py - Bio/Align/bigbed.py - Bio/Align/bigmaf.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/89bbd0480907d88fa88c2b667f3dd6f0acb39528...b5f78be73878cd06d896f79922890708986be93d -- View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/89bbd0480907d88fa88c2b667f3dd6f0acb39528...b5f78be73878cd06d896f79922890708986be93d You're receiving this email because of your account on salsa.debian.org.
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