Pierre Gruet pushed to branch master at Debian Med / sepp
Commits: 5d1e37b4 by Pierre Gruet at 2024-09-30T20:19:08+02:00 New upstream version 4.5.5+dfsg - - - - - 9fdcab31 by Pierre Gruet at 2024-09-30T20:19:34+02:00 Update upstream source from tag 'upstream/4.5.5+dfsg' Update to upstream version '4.5.5+dfsg' with Debian dir 9a26be4e9f37dad3f8242ec8614c74c1d0d6deee - - - - - d5ebcef8 by Pierre Gruet at 2024-09-30T20:20:32+02:00 Upload to unstable - - - - - 5 changed files: - CHANGELOG.md - debian/changelog - sepp/__init__.py - sepp/tree.py - setup.py Changes: ===================================== CHANGELOG.md ===================================== @@ -1,3 +1,5 @@ +* Version 4.5.5: + * Keep backwards compatible with dendropy < 4.5.2 * Version 4.5.4: * Slight improvements in logging key information * Version 4.5.3: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +sepp (4.5.5+dfsg-1) unstable; urgency=medium + + * New upstream version 4.5.5+dfsg + + -- Pierre Gruet <[email protected]> Mon, 30 Sep 2024 20:20:19 +0200 + sepp (4.5.4+dfsg-1) unstable; urgency=medium * New upstream version 4.5.4+dfsg ===================================== sepp/__init__.py ===================================== @@ -27,7 +27,7 @@ __all__ = ['algorithm', 'alignment', 'backtranslate', 'jobs', 'math_utils', 'problem', 'scheduler', 'scratch', 'tree', 'get_logger', 'is_temp_kept', 'version'] -version = "4.5.4" +version = "4.5.5" _DEBUG = ("SEPP_DEBUG" in os.environ) and \ (os.environ["SEPP_DEBUG"].lower() == "true") ===================================== sepp/tree.py ===================================== @@ -256,7 +256,12 @@ for l2 in sys.stdin.readlines(): nr.edge.length = None nr.parent_node = None - nr._convert_node_to_root_polytomy() + try: + nr._convert_node_to_root_polytomy() + except AttributeError: + from dendropy.datamodel.treemodel import \ + _convert_node_to_root_polytomy + _convert_node_to_root_polytomy(nr) t1 = PhylogeneticTree(Tree(seed_node=nr)) # temp we could speed this up, # by telling the Phylogenetic tree how many leaves it has ===================================== setup.py ===================================== @@ -29,7 +29,7 @@ from setuptools import find_packages from distutils.core import setup, Command use_setuptools(version="0.6.24") -version = "4.5.4" +version = "4.5.5" def get_tools_dir(where): View it on GitLab: https://salsa.debian.org/med-team/sepp/-/compare/90e9581b16e22d578d2d9cb9a4c5b754007d8b45...d5ebcef87eaf31ccc2b89f6bf2424733d66eaae7 -- View it on GitLab: https://salsa.debian.org/med-team/sepp/-/compare/90e9581b16e22d578d2d9cb9a4c5b754007d8b45...d5ebcef87eaf31ccc2b89f6bf2424733d66eaae7 You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
