Étienne Mollier pushed to branch master at Debian Med / python-pauvre
Commits: 7cc97557 by Étienne Mollier at 2024-11-07T23:37:03+01:00 syntaxwarning.patch: new: fix SyntaxWarning occurrences. Closes: #1086899 - - - - - b02795d5 by Étienne Mollier at 2024-11-07T23:37:39+01:00 2to3.patch: normalize Last-Update timestamp. - - - - - cb773a71 by Étienne Mollier at 2024-11-07T23:38:10+01:00 d/control: declare compliance to standards version 4.7.0. - - - - - 67ec8ad8 by Étienne Mollier at 2024-11-07T23:38:48+01:00 d/changelog: ready for upload to unstable. - - - - - 5 changed files: - debian/changelog - debian/control - debian/patches/2to3.patch - debian/patches/series - + debian/patches/syntaxwarning.patch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +python-pauvre (0.2.3-4) unstable; urgency=medium + + * syntaxwarning.patch: new: fix SyntaxWarning occurrences. (Closes: #1086899) + * 2to3.patch: normalize Last-Update timestamp. + * d/control: declare compliance to standards version 4.7.0. + + -- Étienne Mollier <[email protected]> Thu, 07 Nov 2024 23:38:31 +0100 + python-pauvre (0.2.3-3) unstable; urgency=medium * pandas-2.0.patch: new: fix ftbfs with pandas 2.0. (Closes: #1044070) ===================================== debian/control ===================================== @@ -16,7 +16,7 @@ Build-Depends: debhelper-compat (= 13), python3-sklearn <!nocheck>, python3-tk <!nocheck>, python3-progressbar <!nocheck> -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pauvre Vcs-Git: https://salsa.debian.org/med-team/python-pauvre.git Homepage: https://github.com/conchoecia/pauvre ===================================== debian/patches/2to3.patch ===================================== @@ -1,5 +1,5 @@ Author: Andreas Tille <[email protected]> -Last-Update: Fri, 24 Apr 2020 12:49:17 +0200 +Last-Update: 2020-04-24 Description: Test script somehow remained at Python2 -> fix this using 2to3 --- a/pauvre/lsi/test.py ===================================== debian/patches/series ===================================== @@ -2,3 +2,4 @@ lsi-test-args.patch biopython-1.80.patch pandas-2.0.patch +syntaxwarning.patch ===================================== debian/patches/syntaxwarning.patch ===================================== @@ -0,0 +1,50 @@ +Description: fix SyntaxWarning. + This patch converts a couple of strings to raw strings in order to fix: + . + /usr/lib/python3/dist-packages/pauvre/gfftools.py:178: + SyntaxWarning: invalid escape sequence '\ ' + """ plots a lff patch + /usr/lib/python3/dist-packages/pauvre/gfftools.py:259: + SyntaxWarning: invalid escape sequence '\ ' + """ plots a rff patch + /usr/lib/python3/dist-packages/pauvre/synplot.py:531: SyntaxWarning: + invalid escape sequence '\i' + seq_name = "$\it{{{0}}}$".format(gff.species) + +Author: Étienne Mollier <[email protected]> +Bug-Debian: https://bugs.debian.org/1086899 +Forwarded: https://github.com/conchoecia/pauvre/pull/49 +Last-Update: 2024-11-07 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- python-pauvre.orig/pauvre/gfftools.py ++++ python-pauvre/pauvre/gfftools.py +@@ -175,7 +175,7 @@ + return panel + + def _plot_lff(panel, left_df, right_df, colorMap, y_pos, bar_thickness, text): +- """ plots a lff patch ++ r""" plots a lff patch + 1__________2 ____________ + | #lff \ \ #rff \ + | left for \3 \ right for \ +@@ -256,7 +256,7 @@ + return panel + + def _plot_rff(panel, left_df, right_df, colorMap, y_pos, bar_thickness, text): +- """ plots a rff patch ++ r""" plots a rff patch + ____________ 1__________2 + | #lff \ \ #rff \ + | left for \ 6\ right for \3 +--- python-pauvre.orig/pauvre/synplot.py ++++ python-pauvre/pauvre/synplot.py +@@ -528,7 +528,7 @@ + #print("{} patches came out of gffplot_horizontal()".format(len(patches))) + seq_name = gff.features['sequence'].unique()[0] + if args.gff_labels: +- seq_name = "$\it{{{0}}}$".format(gff.species) ++ seq_name = r"$\it{{{0}}}$".format(gff.species) + panel0.text(0 + x_offset, len(optGFFs) - i - 1 + (0.18/2), + seq_name, fontsize = 12, + ha='left', va='bottom', View it on GitLab: https://salsa.debian.org/med-team/python-pauvre/-/compare/988b0a75cda29054a0d33d75a96613b0d64c6bd2...67ec8ad88f03da3e56c3ba44dbbb271167b8b195 -- View it on GitLab: https://salsa.debian.org/med-team/python-pauvre/-/compare/988b0a75cda29054a0d33d75a96613b0d64c6bd2...67ec8ad88f03da3e56c3ba44dbbb271167b8b195 You're receiving this email because of your account on salsa.debian.org.
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