Andreas Tille pushed to branch master at Debian Med / ariba
Commits: 6ea87fc3 by Andreas Tille at 2024-12-04T17:24:55+01:00 Fix Python3.12 syntax warnings Closes: #1085332 - - - - - 02b72909 by Andreas Tille at 2024-12-04T17:25:11+01:00 Standards-Version: 4.7.0 (routine-update) - - - - - e5f9cbe6 by Andreas Tille at 2024-12-04T17:31:25+01:00 routine-update: Ready to upload to unstable - - - - - 4 changed files: - debian/changelog - debian/control - + debian/patches/python3.12_syntax_warning.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,12 @@ +ariba (2.14.7+ds-5) unstable; urgency=medium + + * Team upload. + * Fix Python3.12 syntax warnings + Closes: #1085332 + * Standards-Version: 4.7.0 (routine-update) + + -- Andreas Tille <[email protected]> Wed, 04 Dec 2024 17:25:45 +0100 + ariba (2.14.7+ds-4) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -26,7 +26,7 @@ Build-Depends: debhelper-compat (= 13), help2man, asciidoctor, spades [amd64] <!nocheck> -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ariba Vcs-Git: https://salsa.debian.org/med-team/ariba.git Homepage: https://github.com/sanger-pathogens/ariba ===================================== debian/patches/python3.12_syntax_warning.patch ===================================== @@ -0,0 +1,22 @@ +Description: Fix Python3.12 syntax warnings +Bug-Debian: https://bugs.debian.org/1085332 +Author: Andreas Tille <[email protected]> +Last-Update: 2024-12-04 + +--- a/ariba/external_progs.py ++++ b/ariba/external_progs.py +@@ -30,10 +30,10 @@ prog_to_env_var = {x: 'ARIBA_' + x.upper + # ... make the regex permissive and hope things + # still work for later versions + prog_to_version_cmd = { +- 'bowtie2': ('--version', re.compile('.*bowtie2.*version (.*)$')), +- 'cdhit': ('', re.compile('CD-HIT version ([0-9\.]+) \(')), +- 'nucmer': ('--version', re.compile('([0-9]+\.[0-9\.]+.*$)')), +- 'spades': ('--version', re.compile('SPAdes.*v([0-9\.]+)')) ++ 'bowtie2': ('--version', re.compile(r'.*bowtie2.*version (.*)$')), ++ 'cdhit': ('', re.compile(r'CD-HIT version ([0-9\.]+) \(')), ++ 'nucmer': ('--version', re.compile(r'([0-9]+\.[0-9\.]+.*$)')), ++ 'spades': ('--version', re.compile(r'SPAdes.*v([0-9\.]+)')) + } + + ===================================== debian/patches/series ===================================== @@ -5,3 +5,4 @@ disable-tests-with-internet-access.patch support-pymummer-0.11.patch run-debian-spades-wrapper.patch python3.12.patch +python3.12_syntax_warning.patch View it on GitLab: https://salsa.debian.org/med-team/ariba/-/compare/d37cbabb96fe081d8969ffd7dd40239633619ef7...e5f9cbe60bcfe900d4aff1f684c18992406b106a -- View it on GitLab: https://salsa.debian.org/med-team/ariba/-/compare/d37cbabb96fe081d8969ffd7dd40239633619ef7...e5f9cbe60bcfe900d4aff1f684c18992406b106a You're receiving this email because of your account on salsa.debian.org.
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