Pierre Gruet pushed to branch master at Debian Med / picard-tools
Commits: 0601fb2b by Pierre Gruet at 2024-12-05T12:35:41+01:00 New upstream version 3.3.0+dfsg - - - - - 8d8f9306 by Pierre Gruet at 2024-12-05T12:36:16+01:00 Update upstream source from tag 'upstream/3.3.0+dfsg' Update to upstream version '3.3.0+dfsg' with Debian dir dae19386c50aae90706cc1d86f2e992413997f29 - - - - - 207253ab by Pierre Gruet at 2024-12-05T12:36:56+01:00 Raising Standards version to 4.7.0, no change - - - - - 23bc363a by Pierre Gruet at 2024-12-05T12:38:46+01:00 Refreshing dates in d/copyright - - - - - e83113cc by Pierre Gruet at 2024-12-26T21:47:55+01:00 Updating the list of build-dependencies - - - - - 80dd9b79 by Pierre Gruet at 2024-12-26T22:00:49+01:00 Refreshing patches - - - - - 74ce0b45 by Pierre Gruet at 2024-12-26T22:05:58+01:00 Fixing test accuracy issue - - - - - b10872f5 by Pierre Gruet at 2024-12-26T22:06:24+01:00 Patching out code related to Google cloud services - - - - - d5010dbd by Pierre Gruet at 2024-12-26T22:07:35+01:00 Updating changelog - - - - - e589e5ba by Pierre Gruet at 2024-12-26T22:14:09+01:00 Upload to unstable - - - - - 30 changed files: - .github/workflows/cloud_tests.yml - .gitignore - Dockerfile - build.gradle - build_push_docker.sh - debian/changelog - debian/control - debian/copyright - debian/patches/10-build.patch - debian/patches/20-shadowjar.patch - debian/patches/40-tests-fix-testng.patch - − debian/patches/60-tests-exclude-network.patch - debian/patches/com_sun_javadoc_removal_in_openjdk17.patch - debian/patches/correct_dataprovider_TestDontMergeAbuttingData.patch - debian/patches/fix_unreadabletests.patch - debian/patches/omit_BamToBfq.patch - debian/patches/remove_google_nio.patch - debian/patches/series - + debian/patches/test_accuracy.patch - gradle/wrapper/gradle-wrapper.properties - gradlew - src/main/java/picard/analysis/CollectQualityYieldMetrics.java - + src/main/java/picard/analysis/CollectQualityYieldMetricsFlow.java - + src/main/java/picard/analysis/CollectQualityYieldMetricsSNVQ.java - src/main/java/picard/analysis/directed/PanelMetricsBase.java - src/main/java/picard/analysis/directed/TargetMetricsCollector.java - src/main/java/picard/cmdline/CommandLineProgram.java - src/main/java/picard/cmdline/StandardOptionDefinitions.java - src/main/java/picard/cmdline/argumentcollections/OptionalReferenceArgumentCollection.java - src/main/java/picard/cmdline/argumentcollections/ReferenceArgumentCollection.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/9aa2e0e10df007b08d50193739a5a7c526d17825...e589e5ba0a6efc817aa6e9d3351ea8ff95ddda9b -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/9aa2e0e10df007b08d50193739a5a7c526d17825...e589e5ba0a6efc817aa6e9d3351ea8ff95ddda9b You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
