Pierre Gruet pushed to branch master at Debian Med / htsjdk
Commits: 386fe92f by Pierre Gruet at 2024-10-09T09:45:19+02:00 New upstream version 4.1.3+dfsg - - - - - 32e940dc by Pierre Gruet at 2024-10-09T09:46:05+02:00 Update upstream source from tag 'upstream/4.1.3+dfsg' Update to upstream version '4.1.3+dfsg' with Debian dir d28aea167091cac9ac94e4b8fe3b70eb30a72d9a - - - - - 9eb962a3 by Pierre Gruet at 2024-12-26T21:41:58+01:00 Refreshing patches - - - - - 05a568a1 by Pierre Gruet at 2024-12-26T21:42:55+01:00 Using libjson-java instead of mjson to replace non-free org.json - - - - - 2e64792f by Pierre Gruet at 2024-12-26T21:43:10+01:00 Updating Maven rules - - - - - 8c086fbb by Pierre Gruet at 2024-12-26T21:44:07+01:00 Removing a test file that seems to be unreadable - - - - - 095c9999 by Pierre Gruet at 2024-12-26T21:45:27+01:00 Changing date format in patch 10 - - - - - 4d9a7192 by Pierre Gruet at 2024-12-26T21:48:42+01:00 Removing old mjson patch from d/p/series - - - - - 3bac8806 by Pierre Gruet at 2024-12-26T21:56:40+01:00 Polishing header of patch 171 - - - - - 2f542a56 by Pierre Gruet at 2024-12-26T21:56:52+01:00 Updating changelog - - - - - 086d2014 by Pierre Gruet at 2024-12-26T23:44:52+01:00 Cleaning test file only if it is at the root currently - - - - - 4a58db42 by Pierre Gruet at 2024-12-26T23:45:04+01:00 Upload to unstable - - - - - 30 changed files: - build.gradle - debian/changelog - debian/control - debian/maven.rules - debian/patches/10-build.xml.patch - debian/patches/100-fix-java11 - debian/patches/150-use-rhino-as-JS-engine.patch - − debian/patches/170-use-mjson.patch - + debian/patches/171-use-org-kordamp-json.patch - − debian/patches/180-ambiguous-assertions.patch - debian/patches/20-fix-version.patch - debian/patches/30-disable-scalatest.patch - debian/patches/60-enable-tests - debian/patches/90-disable-testftp.patch - debian/patches/92-disable-testhttp.patch - debian/patches/series - debian/rules - gradle/wrapper/gradle-wrapper.properties - gradlew - scripts/install-samtools.sh - src/main/java/htsjdk/beta/codecs/hapref/fasta/FASTADecoderV1_0.java - src/main/java/htsjdk/beta/codecs/reads/ReadsCodecUtils.java - src/main/java/htsjdk/beta/codecs/reads/bam/BAMCodec.java - src/main/java/htsjdk/beta/codecs/reads/bam/BAMDecoder.java - src/main/java/htsjdk/beta/codecs/reads/bam/BAMEncoder.java - src/main/java/htsjdk/beta/codecs/reads/bam/bamV1_0/BAMDecoderV1_0.java - src/main/java/htsjdk/beta/codecs/reads/bam/bamV1_0/BAMEncoderV1_0.java - src/main/java/htsjdk/beta/codecs/reads/cram/CRAMCodec.java - src/main/java/htsjdk/beta/codecs/reads/cram/CRAMDecoder.java - src/main/java/htsjdk/beta/codecs/reads/cram/CRAMEncoder.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/compare/5532e2d62b6fed55df6d713bf1d753624bc8344c...4a58db4251b844adac96f61ee2c8dd6d2767318d -- View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/compare/5532e2d62b6fed55df6d713bf1d753624bc8344c...4a58db4251b844adac96f61ee2c8dd6d2767318d You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
