Pierre Gruet pushed to branch upstream at Debian Med / htsjdk
Commits: 386fe92f by Pierre Gruet at 2024-10-09T09:45:19+02:00 New upstream version 4.1.3+dfsg - - - - - 30 changed files: - build.gradle - gradle/wrapper/gradle-wrapper.properties - gradlew - scripts/install-samtools.sh - src/main/java/htsjdk/beta/codecs/hapref/fasta/FASTADecoderV1_0.java - src/main/java/htsjdk/beta/codecs/reads/ReadsCodecUtils.java - src/main/java/htsjdk/beta/codecs/reads/bam/BAMCodec.java - src/main/java/htsjdk/beta/codecs/reads/bam/BAMDecoder.java - src/main/java/htsjdk/beta/codecs/reads/bam/BAMEncoder.java - src/main/java/htsjdk/beta/codecs/reads/bam/bamV1_0/BAMDecoderV1_0.java - src/main/java/htsjdk/beta/codecs/reads/bam/bamV1_0/BAMEncoderV1_0.java - src/main/java/htsjdk/beta/codecs/reads/cram/CRAMCodec.java - src/main/java/htsjdk/beta/codecs/reads/cram/CRAMDecoder.java - src/main/java/htsjdk/beta/codecs/reads/cram/CRAMEncoder.java - src/main/java/htsjdk/beta/codecs/reads/cram/cramV2_1/CRAMDecoderV2_1.java - src/main/java/htsjdk/beta/codecs/reads/cram/cramV2_1/CRAMEncoderV2_1.java - src/main/java/htsjdk/beta/codecs/reads/cram/cramV3_0/CRAMDecoderV3_0.java - src/main/java/htsjdk/beta/codecs/reads/cram/cramV3_0/CRAMEncoderV3_0.java - src/main/java/htsjdk/beta/codecs/reads/htsget/HtsgetBAMCodec.java - src/main/java/htsjdk/beta/codecs/reads/htsget/HtsgetBAMDecoder.java - src/main/java/htsjdk/beta/codecs/reads/htsget/htsgetBAMV1_2/HtsgetBAMCodecV1_2.java - src/main/java/htsjdk/beta/codecs/reads/htsget/htsgetBAMV1_2/HtsgetBAMDecoderV1_2.java - src/main/java/htsjdk/beta/codecs/reads/sam/SAMCodec.java - src/main/java/htsjdk/beta/codecs/reads/sam/SAMDecoder.java - src/main/java/htsjdk/beta/codecs/reads/sam/SAMEncoder.java - src/main/java/htsjdk/beta/codecs/reads/sam/samV1_0/SAMDecoderV1_0.java - src/main/java/htsjdk/beta/codecs/reads/sam/samV1_0/SAMEncoderV1_0.java - src/main/java/htsjdk/beta/codecs/variants/vcf/VCFDecoder.java - src/main/java/htsjdk/beta/codecs/variants/vcf/VCFEncoder.java - src/main/java/htsjdk/beta/codecs/variants/vcf/VariantsCodecUtils.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/commit/386fe92fcd2e393e6042a9137b486ef4159c14c8 -- View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/commit/386fe92fcd2e393e6042a9137b486ef4159c14c8 You're receiving this email because of your account on salsa.debian.org.
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