Andreas Tille pushed to branch master at Debian Med / fast5
Commits: cbe268f1 by Andreas Tille at 2024-12-31T18:43:31+01:00 New patch hdf5-1.14.patch: set -DH5_USE_110_API into src/Makefile as well, to fix autopkgtest - - - - - 3 changed files: - debian/changelog - + debian/patches/hdf5-1.14.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,12 @@ +fast5 (0.6.5-9) UNRELEASED; urgency=medium + + * Team upload. + * New patch hdf5-1.14.patch: set -DH5_USE_110_API into src/Makefile + as well, to fix autopkgtest + Closes: #1090898 + + -- Gilles Filippini <[email protected]> Sat, 21 Dec 2024 22:43:21 +0100 + fast5 (0.6.5-8) unstable; urgency=medium * d/control: set CPPFLAGS to add -DH5_USE_110_API. ===================================== debian/patches/hdf5-1.14.patch ===================================== @@ -0,0 +1,18 @@ +Author: Gilles Filippini <[email protected]> +Last-Update; 2024-12-21 +Bug-Debian: https://bugs.debian.org/1090898 +Description: Adapt to HDF5 1.14 + +Index: fast5-0.6.5/src/Makefile +=================================================================== +--- fast5-0.6.5.orig/src/Makefile ++++ fast5-0.6.5/src/Makefile +@@ -24,7 +24,7 @@ EXTRA_TARGETS = f5dump f5pack + HPP_FILES := $(addprefix ${FAST5_DIR}/, fast5.hpp fast5/hdf5_tools.hpp fast5/Huffman_Packer.hpp fast5/Bit_Packer.hpp) + + CXXFLAGS += -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic +-CPPFLAGS += -isystem ${HDF5_INCLUDE_DIR} -I $(FAST5_DIR) ++CPPFLAGS += -isystem ${HDF5_INCLUDE_DIR} -I $(FAST5_DIR) -DH5_USE_110_API + EXTRA_CPPFLAGS := -isystem ${TCLAP_DIR}/include -I ${HPPTOOLS_DIR}/include + LDFLAGS += -L${HDF5_LIB_DIR} -Wl,--rpath=${HDF5_LIB_DIR} -l${HDF5_LIB} -lpthread -lz -ldl + ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ rpath.patch gcc-12.patch build-flags.patch +hdf5-1.14.patch View it on GitLab: https://salsa.debian.org/med-team/fast5/-/commit/cbe268f18962945ea0a882197fb29f1818368d42 -- View it on GitLab: https://salsa.debian.org/med-team/fast5/-/commit/cbe268f18962945ea0a882197fb29f1818368d42 You're receiving this email because of your account on salsa.debian.org.
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