Author: julia-guest Date: 2012-07-08 13:48:34 +0000 (Sun, 08 Jul 2012) New Revision: 11639
Added: trunk/packages/predictNLS/build-area/ trunk/packages/predictNLS/tarballs/ trunk/packages/predictNLS/trunk/debian/ trunk/packages/predictNLS/trunk/debian/changelog trunk/packages/predictNLS/trunk/debian/compat trunk/packages/predictNLS/trunk/debian/control trunk/packages/predictNLS/trunk/debian/copyright trunk/packages/predictNLS/trunk/debian/rules Log: first commit Property changes on: trunk/packages/predictNLS/build-area ___________________________________________________________________ Added: svn:ignore + * Property changes on: trunk/packages/predictNLS/tarballs ___________________________________________________________________ Added: svn:ignore + * Added: trunk/packages/predictNLS/trunk/debian/changelog =================================================================== --- trunk/packages/predictNLS/trunk/debian/changelog (rev 0) +++ trunk/packages/predictNLS/trunk/debian/changelog 2012-07-08 13:48:34 UTC (rev 11639) @@ -0,0 +1,123 @@ +predictnls (1.0.18) unstable; urgency=low + + * fixed warnings for test sequences MNKIPIKDLLNPGAA and MNKIPIKDLLNPG + * bug 39 (PredictNLS misses any NLS right at start of the protein) fixed + * fixed bug 37, 38, 40: LICENSE file missing; PredictNLS start positions + off by one (using zero based counting); predictNLS only reports last + match for any one NLS motif + + -- Laszlo Kajan <[email protected]> Fri, 03 Jun 2011 19:00:02 +0200 + +predictnls (1.0.17) unstable; urgency=low + + * better error reporting around line 301 + + -- Laszlo Kajan <[email protected]> Sun, 17 Apr 2011 13:29:38 +0200 + +predictnls (1.0.16) unstable; urgency=low + + * bugzilla url + * popularity contest + + -- Laszlo Kajan <[email protected]> Fri, 18 Feb 2011 17:57:00 +0100 + +predictnls (1.0.15) stable; urgency=low + + * Changed references to online help + + -- Guy Yachdav <[email protected]> Thu, 04 Nov 2010 20:33:24 +0100 + +predictnls (1.0.14) stable; urgency=low + + * fixed perl warning + + -- Laszlo Kajan <[email protected]> Wed, 13 Oct 2010 13:09:22 +0200 + +predictnls (1.0.13) stable; urgency=low + + * fixed deletion of output file bug + + -- Laszlo Kajan <[email protected]> Wed, 13 Oct 2010 13:05:47 +0200 + +predictnls (1.0.12) stable; urgency=low + + * added nlsdat option to extract non-html nls prediction along with the html + * fixed html report table + + -- Laszlo Kajan <[email protected]> Wed, 13 Oct 2010 12:35:26 +0200 + +predictnls (1.0.11) stable; urgency=low + + * Fixed temporary dir missing '/' bug + + -- Laszlo Kajan <[email protected]> Sat, 25 Sep 2010 23:04:53 +0200 + +predictnls (1.0.10) + + * Fixed make file + + -- Laszlo Kajan <[email protected]> Wed, 18 Aug 2010 12:18:07 +0200 + +predictnls (1.0.9) + + * Implemented check for one-sequence fasta input - as expected by program + + -- Laszlo Kajan <[email protected]> Wed, 18 Aug 2010 12:06:23 +0200 + +predictnls (1.0.8) + + * New README - now with content + * New options: --version, --help, uses Pod::Usage + + -- Laszlo Kajan <[email protected]> Wed, 18 Aug 2010 11:51:16 +0200 + +predictnls (1.0.7) + + * New data files from Rajesh's predictNLS-v1.3.tgz: ExptNls.rdb is better formatted an extended, My_NLS_list is extended + + -- Laszlo Kajan <[email protected]> Mon, 16 Aug 2010 18:06:04 +0200 + +predictnls (1.0.6) + + * Summary file param now takes path, so does trace + + -- Laszlo Kajan <[email protected]> Thu, 22 Jul 2010 23:10:11 +0200 + +predictnls (1.0.5) + + * Summary file correctly documented and operates + + -- Laszlo Kajan <[email protected]> Thu, 22 Jul 2010 23:10:11 +0200 + +predictnls (1.0.4) + + * html option now defaults to 0 + + -- Laszlo Kajan <[email protected]> Wed, 23 Jun 2010 17:13:00 +0200 + +predictnls (1.0.3) + + * New license: GPL now. + + -- Laszlo Kajan <[email protected]> Tue, 09 Mar 2010 11:23:17 +0100 + +predictnls (1.0.2) + + * example in html format + * fixed unint var warnings + + -- Laszlo Kajan <[email protected]> Mon, 08 Mar 2010 14:37:57 +0100 + +predictnls (1.0.1) + + * upgrade to version from loctree + + -- Laszlo Kajan <[email protected]> Sun, 28 Feb 2010 23:46:29 +0100 + +predictnls (1.0.0) + + * Initial packaged version + + -- Laszlo Kajan <[email protected]> Thu, 18 Feb 2010 15:11:38 +0100 + + Added: trunk/packages/predictNLS/trunk/debian/compat =================================================================== --- trunk/packages/predictNLS/trunk/debian/compat (rev 0) +++ trunk/packages/predictNLS/trunk/debian/compat 2012-07-08 13:48:34 UTC (rev 11639) @@ -0,0 +1 @@ +7 Added: trunk/packages/predictNLS/trunk/debian/control =================================================================== --- trunk/packages/predictNLS/trunk/debian/control (rev 0) +++ trunk/packages/predictNLS/trunk/debian/control 2012-07-08 13:48:34 UTC (rev 11639) @@ -0,0 +1,14 @@ +Source: predictnls +Section: science +Priority: extra +Maintainer: Laszlo Kajan <[email protected]> +Build-Depends: debhelper (>= 7), autotools-dev +Standards-Version: 3.9.1 +Homepage: http://www.rostlab.org/services/predictNLS/ + +Package: predictnls +Architecture: all +Depends: ${shlibs:Depends}, ${misc:Depends}, perl +Recommends: pp-popularity-contest +Description: prediction and analysis of nuclear localization signals + PredictNLS predicts if your protein is nuclear. If no NLS is found you can predict the subcellular localization of the protein using loctree. Added: trunk/packages/predictNLS/trunk/debian/copyright =================================================================== --- trunk/packages/predictNLS/trunk/debian/copyright (rev 0) +++ trunk/packages/predictNLS/trunk/debian/copyright 2012-07-08 13:48:34 UTC (rev 11639) @@ -0,0 +1,29 @@ +This package was debianized by Laszlo Kajan <[email protected]> on +Fri, 19 Feb 2010 15:45:28 +0100 + +Upstream Author: + + R. Nair + +Copyright: + + Copyright © 2010 R. Nair + +License: + + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this package; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + +The Debian packaging is (C) 2009, Laszlo Kajan <[email protected]> and +is licensed under the GPL, see `/usr/share/common-licenses/GPL'. Added: trunk/packages/predictNLS/trunk/debian/rules =================================================================== --- trunk/packages/predictNLS/trunk/debian/rules (rev 0) +++ trunk/packages/predictNLS/trunk/debian/rules 2012-07-08 13:48:34 UTC (rev 11639) @@ -0,0 +1,105 @@ +#!/usr/bin/make -f +# -*- makefile -*- +# Sample debian/rules that uses debhelper. +# This file was originally written by Joey Hess and Craig Small. +# As a special exception, when this file is copied by dh-make into a +# dh-make output file, you may use that output file without restriction. +# This special exception was added by Craig Small in version 0.37 of dh-make. + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + + +# These are used for cross-compiling and for saving the configure script +# from having to guess our platform (since we know it already) +DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE) +DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE) +ifneq ($(DEB_HOST_GNU_TYPE),$(DEB_BUILD_GNU_TYPE)) +CROSS= --build $(DEB_BUILD_GNU_TYPE) --host $(DEB_HOST_GNU_TYPE) +else +CROSS= --build $(DEB_BUILD_GNU_TYPE) +endif + + + +config.status: configure + dh_testdir + # Add here commands to configure the package. +ifneq "$(wildcard /usr/share/misc/config.sub)" "" + cp -f /usr/share/misc/config.sub config.sub +endif +ifneq "$(wildcard /usr/share/misc/config.guess)" "" + cp -f /usr/share/misc/config.guess config.guess +endif + ./configure $(CROSS) --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info --sysconfdir=/etc CFLAGS="$(CFLAGS)" LDFLAGS="-Wl,-z,defs" + + +build: build-stamp + +build-stamp: config.status + dh_testdir + + # Add here commands to compile the package. + $(MAKE) + #docbook-to-man debian/predictnls.sgml > predictnls.1 + + touch $@ + +clean: + dh_testdir + dh_testroot + rm -f build-stamp + + # Add here commands to clean up after the build process. + [ ! -f Makefile ] || $(MAKE) distclean + rm -f config.sub config.guess + + dh_clean + +install: build + dh_testdir + dh_testroot + dh_prep + dh_installdirs + + # Add here commands to install the package into debian/predictnls. + $(MAKE) DESTDIR=$(CURDIR)/debian/predictnls install + + +# Build architecture-independent files here. +binary-indep: build install + dh_testdir + dh_testroot + dh_installchangelogs ChangeLog + dh_installdocs + dh_installexamples +# dh_install +# dh_installmenu +# dh_installdebconf +# dh_installlogrotate +# dh_installemacsen +# dh_installpam +# dh_installmime +# dh_python +# dh_installinit +# dh_installcron +# dh_installinfo + dh_installman + dh_link + dh_strip + dh_compress + dh_fixperms --exclude grep_NLS_update.pl +# dh_perl +# dh_makeshlibs + dh_installdeb + dh_shlibdeps + dh_gencontrol + dh_md5sums + dh_builddeb + +# Build architecture-dependent files here. +binary-arch: build install +# We have nothing to do by default. + +binary: binary-indep binary-arch +.PHONY: build clean binary-indep binary-arch binary install Property changes on: trunk/packages/predictNLS/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
