Michael R. Crusoe pushed to branch master at Debian Med / bwa-mem2
Commits: 173864ce by Michael R. Crusoe at 2025-02-27T12:35:35+01:00 improve the hardening patch - - - - - 1 changed file: - debian/patches/hardening Changes: ===================================== debian/patches/hardening ===================================== @@ -4,15 +4,20 @@ Subject: Enable proper flag appending so that Debian can harden the build. Forwarded: https://github.com/bwa-mem2/bwa-mem2/pull/69 --- - Makefile | 2 +- + Makefile | 4 ++-- ext/safestringlib/makefile | 8 ++++---- - 2 files changed, 5 insertions(+), 5 deletions(-) + 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/Makefile b/Makefile -index 359585f..da91f57 100644 +index 359585f..717504d 100644 --- a/Makefile +++ b/Makefile -@@ -115,7 +115,7 @@ multi: +@@ -111,11 +111,11 @@ multi: + $(MAKE) arch=avx2 EXE=bwa-mem2.avx2 CXX=$(CXX) all + rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean; + $(MAKE) arch=avx512 EXE=bwa-mem2.avx512bw CXX=$(CXX) all +- $(CXX) -Wall -O3 src/runsimd.cpp -Iext/safestringlib/include -Lext/safestringlib/ -lsafestring $(STATIC_GCC) -o bwa-mem2 ++ $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) -Wall -O3 src/runsimd.cpp -Iext/safestringlib/include -Lext/safestringlib/ -lsafestring $(STATIC_GCC) -o bwa-mem2 $(EXE):$(BWA_LIB) $(SAFE_STR_LIB) src/main.o View it on GitLab: https://salsa.debian.org/med-team/bwa-mem2/-/commit/173864cead8ce7efeb2ac9220f9f9f1a6e9bab87 -- View it on GitLab: https://salsa.debian.org/med-team/bwa-mem2/-/commit/173864cead8ce7efeb2ac9220f9f9f1a6e9bab87 You're receiving this email because of your account on salsa.debian.org.
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