Étienne Mollier pushed to branch master at Debian Med / hyphy
Commits: 46e0fe05 by Étienne Mollier at 2025-03-05T12:38:24+01:00 rm_arch_specific_flags.patch: update to include NEON variants. This is needed to fix illegal instruction errors seen in autopkgtest. - - - - - d61b3a59 by Étienne Mollier at 2025-03-05T12:39:37+01:00 d/rules: leave a note to build NEON SIMDe variants. - - - - - a4241868 by Étienne Mollier at 2025-03-05T12:41:15+01:00 New upstream version 2.5.69+dfsg - - - - - 78fe4f34 by Étienne Mollier at 2025-03-05T12:41:22+01:00 Update upstream source from tag 'upstream/2.5.69+dfsg' Update to upstream version '2.5.69+dfsg' with Debian dir effcc6cc20bba7d7a1b1f6430709075a5e402621 - - - - - 73680020 by Étienne Mollier at 2025-03-05T12:42:51+01:00 d/control: declare compliance to standards version 4.7.2. - - - - - ecf9f78c by Étienne Mollier at 2025-03-05T12:43:52+01:00 d/changelog: ready for upload to unstable. - - - - - 4 changed files: - debian/changelog - debian/control - debian/patches/rm_arch_specific_flags.patch - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +hyphy (2.5.69+dfsg-1) unstable; urgency=medium + + * New upstream version 2.5.69+dfsg (no changes). + * rm_arch_specific_flags.patch: update to include NEON variants. + This is needed to fix illegal instruction errors seen in autopkgtest. + * d/rules: leave a note to build NEON SIMDe variants. + * d/control: declare compliance to standards version 4.7.2. + + -- Étienne Mollier <[email protected]> Wed, 05 Mar 2025 12:43:12 +0100 + hyphy (2.5.68+dfsg-1) unstable; urgency=medium * New upstream version 2.5.68+dfsg ===================================== debian/control ===================================== @@ -15,7 +15,7 @@ Build-Depends: debhelper-compat (= 13), libpython3-all-dev, python3-all-dev:any, chrpath -Standards-Version: 4.7.0 +Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/hyphy Vcs-Git: https://salsa.debian.org/med-team/hyphy.git Homepage: https://hyphy.org/ ===================================== debian/patches/rm_arch_specific_flags.patch ===================================== @@ -29,6 +29,15 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ add_definitions (-D_SLKP_USE_AVX_INTRINSICS) PCL_CHECK_FOR_FMA3() if (${HAVE_FMA3}) +@@ -238,7 +238,7 @@ + PCL_CHECK_FOR_NEON() + if(${HAVE_NEON_EXTENSIONS}) + add_definitions (-D_SLKP_USE_ARM_NEON) +- set(DEFAULT_COMPILE_FLAGS "${DEFAULT_COMPILE_FLAGS} -mcpu=native -mtune=native ") ++ set(DEFAULT_COMPILE_FLAGS "${DEFAULT_COMPILE_FLAGS} ") + endif(${HAVE_NEON_EXTENSIONS}) + endif(NOT NONEON) + @@ -251,7 +251,7 @@ if(NOAVX) if(NOSSE4) @@ -47,3 +56,12 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ add_definitions (-D_SLKP_USE_AVX_INTRINSICS) PCL_CHECK_FOR_FMA3() if (${HAVE_FMA3}) +@@ -286,7 +286,7 @@ + PCL_CHECK_FOR_NEON() + if(${HAVE_NEON_EXTENSIONS}) + add_definitions (-D_SLKP_USE_ARM_NEON) +- set(DEFAULT_COMPILE_FLAGS "${DEFAULT_COMPILE_FLAGS} -mcpu=native -mtune=native ") ++ set(DEFAULT_COMPILE_FLAGS "${DEFAULT_COMPILE_FLAGS} ") + + endif(${HAVE_NEON_EXTENSIONS}) + endif(NOT NONEON) ===================================== debian/rules ===================================== @@ -17,6 +17,8 @@ ISOFILES += $(DTMP)/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst %: dh $@ --buildsystem=cmake +# FIXME: build NEON SIMDe variants for Aarch64. + override_dh_auto_clean: ifeq (amd64,$(DEB_HOST_ARCH)) dh_auto_clean --builddirectory obj-avx View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/cab2836da06a67c36d4d8e44d103577abde69da1...ecf9f78c402ad8378e6c1b81a2e18bc3bd42af41 -- View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/cab2836da06a67c36d4d8e44d103577abde69da1...ecf9f78c402ad8378e6c1b81a2e18bc3bd42af41 You're receiving this email because of your account on salsa.debian.org.
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