Andrius Merkys pushed to branch master at Debian Med / ncbi-igblast
Commits: ed67e3dc by Andrius Merkys at 2025-03-06T03:39:59-05:00 Link in internal_data/ directory locally for autopkgtest, as it does not get automatically detected on some hosts. - - - - - d3423ed0 by Andrius Merkys at 2025-03-07T02:20:09-05:00 Use chrpath to remove RUNPATH from binaries. - - - - - 0ae12ba1 by Andrius Merkys at 2025-03-07T02:21:07-05:00 Sort B-Ds. - - - - - baa06a6d by Andrius Merkys at 2025-03-07T02:22:16-05:00 Build with system-provided mbedtls. - - - - - 516b5f92 by Andrius Merkys at 2025-03-07T02:23:03-05:00 Update changelog for 1.20.0-2 release - - - - - 4 changed files: - debian/changelog - debian/control - debian/rules - debian/tests/igblast Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,12 @@ +ncbi-igblast (1.20.0-2) unstable; urgency=medium + + * Link in internal_data/ directory locally for autopkgtest, as it does not + get automatically detected on some hosts. + * Use chrpath to remove RUNPATH from binaries. + * Build with system-provided mbedtls. + + -- Andrius Merkys <[email protected]> Fri, 07 Mar 2025 02:22:46 -0500 + ncbi-igblast (1.20.0-1) unstable; urgency=medium [ Andreas Tille ] ===================================== debian/control ===================================== @@ -5,10 +5,12 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: David Miguel Susano Pinto <[email protected]>, Steffen Moeller <[email protected]>, Andrius Merkys <[email protected]> -Build-Depends: debhelper-compat (= 13), - time, +Build-Depends: chrpath, + debhelper-compat (= 13), + libmbedtls-dev, libncbi-vdb-dev, - procps + procps, + time Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/ncbi-igblast Vcs-Git: https://salsa.debian.org/med-team/ncbi-igblast.git ===================================== debian/rules ===================================== @@ -14,6 +14,7 @@ VDB_INCLUDE=$(VDB_INC) $(VDB_SUBTREES:%=$(VDB_INC)/%) override_dh_auto_configure: cd c++ && yes | \ ./configure.orig --prefix=/usr \ + --with-mbedtls \ --with-openmp $(WITH_OPTIM) \ --with-vdb=/usr VDB_INCLUDE="$(VDB_INCLUDE)" \ --without-runpath \ @@ -23,6 +24,7 @@ override_dh_auto_configure: override_dh_auto_build: cd c++/*/build && make -f Makefile.flat app/igblast/ + find . -name igblastn -o -name igblastp | xargs chrpath --delete override_dh_auto_install: find . -name igblastn ===================================== debian/tests/igblast ===================================== @@ -7,6 +7,7 @@ cp c++/src/objtools/blast/seqdb_writer/unit_test/data/WP_009685663.fasta ${TMPDI ( cd ${TMPDIR} + ln -s /usr/share/ncbi/igblast/internal_data igblastp -germline_db_V mouse_V -query WP_009685663.fasta ) View it on GitLab: https://salsa.debian.org/med-team/ncbi-igblast/-/compare/6fa8c3753ef168fd6a97e8b357e0e669c6f6643e...516b5f92f2e496bab5e4bde6f5e84623e37cfa1c -- View it on GitLab: https://salsa.debian.org/med-team/ncbi-igblast/-/compare/6fa8c3753ef168fd6a97e8b357e0e669c6f6643e...516b5f92f2e496bab5e4bde6f5e84623e37cfa1c You're receiving this email because of your account on salsa.debian.org.
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