Étienne Mollier pushed to branch master at Debian Med / diamond-aligner
Commits: 417a2d34 by Étienne Mollier at 2025-03-09T10:45:37+01:00 fix_missing_cstring_riscv64.patch: add dep3 header. Gbp-Dch: ignore - - - - - 08a9db9c by Étienne Mollier at 2025-03-09T10:48:22+01:00 d/changelog: ready for upload to unstable. - - - - - 2 changed files: - debian/changelog - debian/patches/fix_missing_cstring_riscv64.patch Changes: ===================================== debian/changelog ===================================== @@ -1,8 +1,9 @@ -diamond-aligner (2.1.11-1.1) UNRELEASED; urgency=medium +diamond-aligner (2.1.11-2) unstable; urgency=medium - * fix memcpy not defined on riscv64. + [ Gui-Yue ] + * fix memcpy not defined on riscv64. (Closes: #1099828) - -- Gui-Yue <[email protected]> Sat, 08 Mar 2025 19:10:25 +0800 + -- Étienne Mollier <[email protected]> Sun, 09 Mar 2025 10:47:09 +0100 diamond-aligner (2.1.11-1) unstable; urgency=medium ===================================== debian/patches/fix_missing_cstring_riscv64.patch ===================================== @@ -1,3 +1,25 @@ +Description: fix gcc error caused by missing include cstring + diamond compile failed caused by not explicitly including <cstring>.The crucial log is here: + . + /build/reproducible-path/diamond-aligner-2.1.11/src/search/finger_print.h:138:17: + error: ‘memcpy’ was not declared in this scope + 138 | memcpy(r, q - 16, 48); + | ^~~~~~ + /build/reproducible-path/diamond-aligner-2.1.11/src/search/finger_print.h:26:1: + note: ‘memcpy’ is defined in header ‘’; this is probably + fixable by adding ‘#include <cstring>’ + 25 | #include "basic/value.h" + +++ |+#include + 26 | + . + This issue can be fixed by "#include <cstring>" +Author: Yue Gui <[email protected]> +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1099828 +Forwarded: https://github.com/bbuchfink/diamond/pull/864 +Reviewed-by: Étienne Mollier <[email protected]> +Last-Update: 2025-03-09 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ --- a/src/search/finger_print.h +++ b/src/search/finger_print.h @@ -23,6 +23,7 @@ View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/a3323275ef6ef6621bc9a62019e15d6f218ef647...08a9db9c54c90622b1210036d486472b01a50a69 -- View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/a3323275ef6ef6621bc9a62019e15d6f218ef647...08a9db9c54c90622b1210036d486472b01a50a69 You're receiving this email because of your account on salsa.debian.org.
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