Sascha Steinbiss pushed to branch master at Debian Med / augustus
Commits: 3d24b1c5 by Sascha Steinbiss at 2025-03-24T09:49:46+01:00 add patch to enable building with GCC 15 - - - - - 1beb82e3 by Sascha Steinbiss at 2025-03-24T09:49:57+01:00 bump Standards-Version - - - - - 3fed1b62 by Sascha Steinbiss at 2025-03-24T09:50:12+01:00 bump copyright date for debian/ directory - - - - - 1e867044 by Sascha Steinbiss at 2025-03-24T09:50:18+01:00 use libncurses-dev instead of libncurses5-dev - - - - - 5 changed files: - debian/changelog - debian/control - debian/copyright - + debian/patches/gcc-15.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +augustus (3.5.0+dfsg-5) unstable; urgency=medium + + * Add patch to enable building with GCC 15. + Closes: #1096345 + * Bump Standards-Version. + * Bump copyright date for debian/ directory. + * Use libncurses-dev instead of libncurses5-dev. + + -- Sascha Steinbiss <[email protected]> Mon, 24 Mar 2025 00:47:37 +0100 + augustus (3.5.0+dfsg-4) unstable; urgency=medium * Ensure multiple builds can be done in same directory. ===================================== debian/control ===================================== @@ -12,7 +12,7 @@ Build-Depends: debhelper-compat (= 13), libbamtools-dev, libbz2-dev, libhts-dev, - libncurses5-dev, + libncurses-dev, libboost-serialization-dev, libssl-dev, libmysql++-dev, @@ -20,7 +20,7 @@ Build-Depends: debhelper-compat (= 13), python3, samtools, chrpath -Standards-Version: 4.6.1 +Standards-Version: 4.7.2 Rules-Requires-Root: no Vcs-Browser: https://salsa.debian.org/med-team/augustus Vcs-Git: https://salsa.debian.org/med-team/augustus.git ===================================== debian/copyright ===================================== @@ -19,7 +19,7 @@ Copyright: © 2011 University of Greifswald License: Artistic Files: debian/* -Copyright: © 2016 Debian Med Packaging Team <[email protected]> +Copyright: © 2016-2025 Debian Med Packaging Team <[email protected]> License: GPL-3+ License: Artistic ===================================== debian/patches/gcc-15.patch ===================================== @@ -0,0 +1,14 @@ +Description: enable building with GCC 15 +Author: Sascha Steinbiss <[email protected]> +Forwarded: https://github.com/Gaius-Augustus/Augustus/pull/431 +Last-Update: 2025-03-24 +--- a/auxprogs/filterBam/src/headers/bamaccess.hh ++++ b/auxprogs/filterBam/src/headers/bamaccess.hh +@@ -7,6 +7,7 @@ + #include <iostream> + #include <vector> + #include <memory> ++#include <cstdint> + + class BamAlignmentRecord; + typedef std::shared_ptr<BamAlignmentRecord> BamAlignmentRecord_; ===================================== debian/patches/series ===================================== @@ -5,3 +5,4 @@ switch_cgp_testing_off.patch disable-compare.patch s390x-disable-filterbam-tests.patch cstdint.patch +gcc-15.patch View it on GitLab: https://salsa.debian.org/med-team/augustus/-/compare/627c2334566ffdf60c35432101828c8e1d4bab4f...1e867044124eba1318f13b9c080fd66d2fe48390 -- View it on GitLab: https://salsa.debian.org/med-team/augustus/-/compare/627c2334566ffdf60c35432101828c8e1d4bab4f...1e867044124eba1318f13b9c080fd66d2fe48390 You're receiving this email because of your account on salsa.debian.org.
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