Étienne Mollier pushed to branch upstream at Debian Med / bbmap
Commits: 6ae3d455 by Étienne Mollier at 2025-04-05T13:50:21+02:00 New upstream version 39.20+dfsg - - - - - 59 changed files: - README.md - checkstrand.sh - current/aligner/MicroAligner3.java - + current/aligner/MicroWrapper.java - current/aligner/SideChannel3.java - current/barcode/CountBarcodes2.java - current/barcode/PCRMatrix.java - current/bin/AllToAllVectorMaker.java - current/bin/Bin.java - current/bin/BinObject.java - current/bin/BinStats.java - current/bin/Binner.java - current/bin/Cluster.java - current/bin/Contig.java - current/bin/ContigRenamer.java - current/bin/DataLoader.java - current/bin/GradeBins.java - current/bin/Key.java - + current/bin/KmerProb.java - current/bin/Oracle.java - current/bin/QuickBin.java - current/bin/RandomReadsMG.java - current/bin/SamLoader.java - current/bin/SimilarityMeasures.java - current/bin/SpectraCounter.java - current/fileIO/FileFormat.java - current/hiseq/PlotFlowCell.java - current/jgi/BBDuk.java - current/jgi/BBMerge.java - current/jgi/CheckStrand.java - current/jgi/CheckStrand2.java - current/jgi/RQCFilter2.java - current/jgi/Shred.java - current/ml/CellNet.java - current/ml/DataLoader.java - current/ml/Trainer.java - current/prok/Orf.java - current/shared/Shared.java - current/shared/Tools.java - current/stream/SamLine.java - current/structures/FloatList.java - current/structures/LongPair.java - current/structures/Range.java - gradebins.sh - makequickbinvector.sh - + microalign.sh - quickbin.sh - randomreadsmg.sh - + resources/phix_adapters.fa - + resources/polya.fa - + resources/polyc.fa - + resources/polyg.fa - + resources/polyt.fa - + resources/quickbin1D.bbnet - + resources/quickbin1D_all.bbnet - + resources/quickbinND.bbnet - + resources/quickbinND_all.bbnet - + resources/shred4merFractions.tsv - shred.sh The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/commit/6ae3d455a5b891aad671a02f740dac71c8799a1d -- View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/commit/6ae3d455a5b891aad671a02f740dac71c8799a1d You're receiving this email because of your account on salsa.debian.org.
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