Étienne Mollier pushed to branch master at Debian Med / libbio-procedural-perl
Commits: e9b93996 by Étienne Mollier at 2025-04-09T12:09:07+02:00 no_remote_tests.patch: unconditional skip of network tests. Closes: #1098343 - - - - - 70e1b71b by Étienne Mollier at 2025-04-09T12:09:40+02:00 d/rules: remove unneeded proxy settings. - - - - - 113c0ed6 by Étienne Mollier at 2025-04-09T12:09:56+02:00 d/control: declare compliance to standards version 4.7.2. - - - - - 23508253 by Étienne Mollier at 2025-04-09T12:10:26+02:00 d/changelog: ready for team upload to unstable. - - - - - 4 changed files: - debian/changelog - debian/control - debian/patches/no_remote_tests.patch - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +libbio-procedural-perl (1.7.4-5) unstable; urgency=medium + + * Team upload. + * no_remote_tests.patch: unconditional skip of network tests. + (Closes: #1098343) + * d/rules: remove unneeded proxy settings. + * d/control: declare compliance to standards version 4.7.2. + + -- Étienne Mollier <[email protected]> Wed, 09 Apr 2025 12:10:15 +0200 + libbio-procedural-perl (1.7.4-4) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -15,7 +15,7 @@ Build-Depends-Indep: libbio-perl-perl, libbio-db-embl-perl, libtest-requiresinternet-perl, perl -Standards-Version: 4.7.0 +Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/libbio-procedural-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-procedural-perl.git Homepage: https://metacpan.org/release/Bio-Procedural ===================================== debian/patches/no_remote_tests.patch ===================================== @@ -1,38 +1,24 @@ Description: Ignore errors accessing remote hosts - Remark: This bug can be probably ignored since its checking certificates - of hosts three years in future which are possibly invalid at the - time of checking but will most probably valid once the real time - has reached that date. + This bug can be probably ignored since its checking certificates of + hosts three years in future which are possibly invalid at the time of + checking but will most probably valid once the real time has reached + that date. + . + This issue was initially reported as #1078626, and the patch was later + modified to address #1098343. Bug-Debian: https://bugs.debian.org/1078626 Author: Andreas Tille <[email protected]> -Last-Update: 2025-02-16 +Reviewed-By: Étienne Mollier <[email protected]> +Last-Update: 2025-04-09 +Forwarded: not-needed ---- a/t/Perl.t -+++ b/t/Perl.t -@@ -96,7 +96,7 @@ SKIP: { - eval { - $seq_object = get_sequence('genbank',"AI129902"); - }; -- if ($@) { -+ if ($@ || !defined $seq_object) { - skip("problem connecting to GenBank:$@",2); - } else { - ok $seq_object; -@@ -122,7 +122,7 @@ SKIP: { - eval { - $seq_object = get_sequence('genpept',"AAC06201"); - }; -- if ($@) { -+ if ($@ || !defined $seq_object) { - skip("problem connecting to RefSeq:$@",2); - } else { - ok $seq_object; -@@ -135,7 +135,7 @@ SKIP: { - eval { - $blast_report = blast_sequence($seq_object, 0); - }; -- if ($@) { -+ if ($@ || !defined $blast_report) { - skip("problem connecting to NCBI BLAST:$@",2); - } else { - ok $blast_report; +--- libbio-procedural-perl.orig/t/Perl.t ++++ libbio-procedural-perl/t/Perl.t +@@ -63,6 +63,7 @@ + + SKIP: { + test_skip(-tests => 12, -requires_networking => 1, -requires_module => 'LWP::UserAgent'); ++ skip "disabled to avoid network access in every cases", 12; + + # swissprot + SKIP: { ===================================== debian/rules ===================================== @@ -1,7 +1,4 @@ #!/usr/bin/make -f -export http_proxy=http://127.0.0.1:9/ -export https_proxy=http://127.0.0.1:9/ - %: dh $@ View it on GitLab: https://salsa.debian.org/med-team/libbio-procedural-perl/-/compare/b5af8d5af47c103acfe1e6e8d811066715994259...235082531832852608e86266e5d0381b32d2a49c -- View it on GitLab: https://salsa.debian.org/med-team/libbio-procedural-perl/-/compare/b5af8d5af47c103acfe1e6e8d811066715994259...235082531832852608e86266e5d0381b32d2a49c You're receiving this email because of your account on salsa.debian.org.
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