Author: lkajan-guest Date: 2012-07-11 16:19:26 +0000 (Wed, 11 Jul 2012) New Revision: 11746
Modified: trunk/packages/profbval/trunk/debian/changelog trunk/packages/profbval/trunk/debian/control trunk/packages/profbval/trunk/debian/copyright trunk/packages/profbval/trunk/debian/rules trunk/packages/profbval/trunk/debian/upstream Log: reviewed Debianization Modified: trunk/packages/profbval/trunk/debian/changelog =================================================================== --- trunk/packages/profbval/trunk/debian/changelog 2012-07-11 15:58:36 UTC (rev 11745) +++ trunk/packages/profbval/trunk/debian/changelog 2012-07-11 16:19:26 UTC (rev 11746) @@ -1,4 +1,4 @@ -profbval (1.0.18-1) UNRELEASED; urgency=low +profbval (1.0.19-1) UNRELEASED; urgency=low * GPL license Modified: trunk/packages/profbval/trunk/debian/control =================================================================== --- trunk/packages/profbval/trunk/debian/control 2012-07-11 15:58:36 UTC (rev 11745) +++ trunk/packages/profbval/trunk/debian/control 2012-07-11 16:19:26 UTC (rev 11746) @@ -1,25 +1,32 @@ Source: profbval Section: science Priority: extra -Maintainer: Guy Yachdav <[email protected]> -Uploaders: Laszlo Kajan <[email protected]> +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Laszlo Kajan <[email protected]>, Christof Angermüller <[email protected]> Build-Depends: debhelper (>= 8), perl Standards-Version: 3.9.3 -Homepage: http://www.predictprotein.org/docs.php +Homepage: http://rostlab.org/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/profbval/trunk/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/profbval/trunk/ +DM-Upload-Allowed: yes Package: profbval Architecture: all -Depends: ${perl:Depends}, ${shlibs:Depends}, ${misc:Depends}, debconf (>= 0.5), profnet-bval +Depends: ${perl:Depends}, ${misc:Depends}, profnet-bval Recommends: profphd -Description: predicts flexibile/rigid residues from sequence - The mobility of a given residue on the protein surface is related to its - functional role. Therefore, identification of extremely rigid or flexible - residues on the protein surface is helpful for identifying functionally - important residues in proteins. A common measure of atom mobility in proteins - is B-value data from x-ray crystallography structures. PROFbval is the first - web server to predict normalized backbone B-values from - amino-acid sequence. PROFbval can be useful for both protein structure and +Description: predicts flexibile/rigid protein residues from sequence + PROFbval can be useful for both protein structure and function predictions. For instance, a biologist can locate potentially antigenic determinants by identifying the most flexible residues on the protein surface. Additionally, a crystallographer can locate residues that potentially have high experimental B-values. + . + Background: the mobility of a given residue on the protein surface is related + to its functional role. + Therefore, identification of extremely rigid or flexible + residues on the protein surface is helpful for identifying functionally + important residues in proteins. A common measure of atom mobility in proteins + is B-value data from x-ray crystallography structures. PROFbval is the first + tool to predict normalized backbone B-values from amino-acid sequence. + . + Modified: trunk/packages/profbval/trunk/debian/copyright =================================================================== --- trunk/packages/profbval/trunk/debian/copyright 2012-07-11 15:58:36 UTC (rev 11745) +++ trunk/packages/profbval/trunk/debian/copyright 2012-07-11 16:19:26 UTC (rev 11746) @@ -3,12 +3,15 @@ Upstream-Contact: A. Schlessinger <[email protected]> Source: ftp://rostlab.org/profbval/ -Files: * +Files: debian/* Copyright: 2012 Laszlo Kajan <[email protected]> + 2012 Christof Angermüller <[email protected]> License: GPL-3+ -Files: debian/* -Copyright: 2012 Laszlo Kajan <[email protected]> +Files: * +Copyright: 2005, 2006 Avner Schlessinger + 2005, 2006 Burhard Rost + 2006 Guy Yachdav License: GPL-3+ License: GPL-3+ Modified: trunk/packages/profbval/trunk/debian/rules =================================================================== --- trunk/packages/profbval/trunk/debian/rules 2012-07-11 15:58:36 UTC (rev 11745) +++ trunk/packages/profbval/trunk/debian/rules 2012-07-11 16:19:26 UTC (rev 11746) @@ -1,109 +1,7 @@ #!/usr/bin/make -f -# -*- makefile -*- -# Sample debian/rules that uses debhelper. -# This file was originally written by Joey Hess and Craig Small. -# As a special exception, when this file is copied by dh-make into a -# dh-make output file, you may use that output file without restriction. -# This special exception was added by Craig Small in version 0.37 of dh-make. # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 - -# These are used for cross-compiling and for saving the configure script -# from having to guess our platform (since we know it already) -DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE) -DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE) -ifneq ($(DEB_HOST_GNU_TYPE),$(DEB_BUILD_GNU_TYPE)) -CROSS= --build $(DEB_BUILD_GNU_TYPE) --host $(DEB_HOST_GNU_TYPE) -else -CROSS= --build $(DEB_BUILD_GNU_TYPE) -endif - - - -config.status: configure - dh_testdir - # Add here commands to configure the package. -ifneq "$(wildcard /usr/share/misc/config.sub)" "" - cp -f /usr/share/misc/config.sub config.sub -endif -ifneq "$(wildcard /usr/share/misc/config.guess)" "" - cp -f /usr/share/misc/config.guess config.guess -endif - ./configure $(CROSS) --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info CFLAGS="$(CFLAGS)" LDFLAGS="-Wl,-z,defs" --sysconfdir=/etc - - -build: build-stamp build-arch build-indep - -build-stamp: config.status - dh_testdir - - # Add here commands to compile the package. - $(MAKE) - #docbook-to-man debian/profbval.sgml > profbval.1 - - touch $@ - -build-arch: - -build-indep: - -clean: - dh_testdir - dh_testroot - rm -f build-stamp - - # Add here commands to clean up after the build process. - [ ! -f Makefile ] || $(MAKE) distclean - rm -f config.sub config.guess - - dh_clean - -install: build - dh_testdir - dh_testroot - dh_prep - dh_installdirs - - # Add here commands to install the package into debian/profbval. - $(MAKE) DESTDIR=$(CURDIR)/debian/profbval install - - -# Build architecture-independent files here. -binary-indep: build install - dh_testdir - dh_testroot - dh_installchangelogs ChangeLog - dh_installdocs - dh_installexamples -# dh_install -# dh_installmenu -# dh_installdebconf -# dh_installlogrotate -# dh_installemacsen -# dh_installpam -# dh_installmime -# dh_python -# dh_installinit -# dh_installcron -# dh_installinfo - dh_installman - dh_link - dh_strip - dh_compress - dh_fixperms -# dh_perl -# dh_makeshlibs - dh_installdeb - dh_shlibdeps - dh_gencontrol - dh_md5sums - dh_builddeb - -# Build architecture-dependent files here. -binary-arch: build install -# We have nothing to do by default. - -binary: binary-indep binary-arch -.PHONY: build clean binary-indep binary-arch binary install +%: + dh $@ Modified: trunk/packages/profbval/trunk/debian/upstream =================================================================== --- trunk/packages/profbval/trunk/debian/upstream 2012-07-11 15:58:36 UTC (rev 11745) +++ trunk/packages/profbval/trunk/debian/upstream 2012-07-11 16:19:26 UTC (rev 11746) @@ -1,20 +1,20 @@ Name: profbval Reference: -- Author: Schlessinger A, Rost B. - Title: 'Protein flexibility and rigidity predicted from sequence.' - Journal: Proteins - Year: 2005 - Volume: 61 - Number: 1 - Pages: 115-26 - URL: http://www.ncbi.nlm.nih.gov/pubmed/16080156 - PMID: 16080156 -- Author: Schlessinger A, Yachdav G, & Rost B. - Title: 'PROFbval: predict flexible and rigid residues in proteins.' - Journal: Bioinformatics - Year: 2006 - Volume: 22 - Number: 7 - Pages: 891-3 - URL: http://www.ncbi.nlm.nih.gov/pubmed?term=PROFbval%3A%20predict%20flexible%20and%20rigid%20residues%20in%20proteins - PMID: 16455751 + - Author: Avner Schlessinger and Guy Yachdav and Burkhard Rost + Title: 'PROFbval: predict flexible and rigid residues in proteins.' + Journal: Bioinformatics + Year: 2006 + Volume: 22 + Number: 7 + Pages: 891-3 + URL: http://www.ncbi.nlm.nih.gov/pubmed?term=PROFbval%3A%20predict%20flexible%20and%20rigid%20residues%20in%20proteins + PMID: 16455751 + - Author: Avner Schlessinger and Burkhard Rost + Title: 'Protein flexibility and rigidity predicted from sequence.' + Journal: Proteins + Year: 2005 + Volume: 61 + Number: 1 + Pages: 115-26 + URL: http://www.ncbi.nlm.nih.gov/pubmed/16080156 + PMID: 16080156 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
