Michael R. Crusoe pushed to branch upstream at Debian Med / toil
Commits: 972c1073 by Michael R. Crusoe at 2025-05-05T09:19:19+02:00 New upstream version 8.2.0 - - - - - 117 changed files: - .gitlab-ci.yml - MANIFEST.in - Makefile - README.rst - contrib/admin/mypy-with-ignore.py - docs/appendices/environment_vars.rst - + docs/cwl/conformance.rst - docs/cwl/running.rst - docs/index.rst - docs/python/developing.rst - docs/running/cliOptions.rst - docs/running/debugging.rst - docs/running/hpcEnvironments.rst - docs/wdl/conformance.rst - docs/wdl/developing.rst - docs/wdl/running.rst - + docs/wdl/tutorial.rst - + pyproject.toml - requirements-dev.txt - requirements-server.txt - requirements.txt - setup.cfg - setup.py - src/toil/__init__.py - src/toil/batchSystems/abstractBatchSystem.py - src/toil/batchSystems/abstractGridEngineBatchSystem.py - src/toil/batchSystems/awsBatch.py - src/toil/batchSystems/cleanup_support.py - src/toil/batchSystems/kubernetes.py - src/toil/batchSystems/local_support.py - src/toil/batchSystems/mesos/batchSystem.py - src/toil/batchSystems/mesos/test/__init__.py - src/toil/batchSystems/options.py - src/toil/batchSystems/singleMachine.py - src/toil/batchSystems/slurm.py - src/toil/bus.py - src/toil/common.py - src/toil/cwl/cwltoil.py - src/toil/job.py - src/toil/jobStores/abstractJobStore.py - src/toil/jobStores/aws/jobStore.py - src/toil/jobStores/fileJobStore.py - src/toil/jobStores/googleJobStore.py - src/toil/leader.py - src/toil/lib/accelerators.py - src/toil/lib/aws/session.py - src/toil/lib/aws/utils.py - src/toil/lib/bioio.py - src/toil/lib/docker.py - + src/toil/lib/dockstore.py - src/toil/lib/ec2nodes.py - src/toil/lib/exceptions.py - + src/toil/lib/history.py - + src/toil/lib/history_submission.py - src/toil/lib/io.py - src/toil/lib/misc.py - src/toil/lib/resources.py - src/toil/lib/retry.py - src/toil/lib/threading.py - src/toil/lib/integration.py → src/toil/lib/trs.py - + src/toil/lib/web.py - src/toil/options/common.py - src/toil/options/cwl.py - src/toil/options/wdl.py - src/toil/provisioners/gceProvisioner.py - src/toil/server/cli/wes_cwl_runner.py - src/toil/server/utils.py - src/toil/statsAndLogging.py - src/toil/test/__init__.py - src/toil/test/batchSystems/batchSystemTest.py - src/toil/test/batchSystems/test_slurm.py - + src/toil/test/conftest.py - src/toil/test/cwl/conftest.py - src/toil/test/cwl/cwlTest.py - src/toil/test/cwl/mock_mpi/fake_mpi_run.py - + src/toil/test/cwl/optional-file-exists.json - + src/toil/test/cwl/optional-file-missing.json - + src/toil/test/cwl/optional-file.cwl - + src/toil/test/cwl/revsort-job-missing.json - src/toil/test/lib/aws/test_iam.py - src/toil/test/lib/dockerTest.py - + src/toil/test/lib/test_history.py - src/toil/test/lib/test_integration.py → src/toil/test/lib/test_trs.py - src/toil/test/provisioners/aws/awsProvisionerTest.py - src/toil/test/provisioners/clusterTest.py - src/toil/test/provisioners/gceProvisionerTest.py - src/toil/test/sort/sort.py - src/toil/test/src/busTest.py - src/toil/test/src/deferredFunctionTest.py - src/toil/test/src/importExportFileTest.py - src/toil/test/src/jobEncapsulationTest.py - src/toil/test/src/jobServiceTest.py - src/toil/test/src/jobTest.py - src/toil/test/src/miscTests.py - src/toil/test/src/promisedRequirementTest.py - src/toil/test/src/regularLogTest.py - src/toil/test/src/resourceTest.py - src/toil/test/src/restartDAGTest.py - src/toil/test/src/resumabilityTest.py - src/toil/test/src/retainTempDirTest.py - src/toil/test/src/systemTest.py - src/toil/test/src/threadingTest.py - src/toil/test/utils/ABCWorkflowDebug/debugWorkflow.py - src/toil/test/utils/toilDebugTest.py - src/toil/test/utils/toilKillTest.py - src/toil/test/utils/utilsTest.py - + src/toil/test/wdl/lint_error.wdl - + src/toil/test/wdl/testfiles/drop_files.wdl - + src/toil/test/wdl/testfiles/drop_files_subworkflow.wdl - + src/toil/test/wdl/testfiles/empty.txt - + src/toil/test/wdl/testfiles/string_file_coercion.json - + src/toil/test/wdl/testfiles/string_file_coercion.wdl - src/toil/test/wdl/wdltoil_test.py - src/toil/test/wdl/wdltoil_test_kubernetes.py - src/toil/wdl/wdltoil.py - src/toil/worker.py - version_template.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/972c1073a5fa9bac5fd87d69fe0b10caa8c7f55c -- View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/972c1073a5fa9bac5fd87d69fe0b10caa8c7f55c You're receiving this email because of your account on salsa.debian.org.
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