Étienne Mollier pushed to branch master at Debian Med / metaphlan
Commits: 895336df by Étienne Mollier at 2025-05-22T21:47:30+02:00 d/copyright: bring up the header paragraph. - - - - - 7b5d5743 by Étienne Mollier at 2025-05-22T21:48:55+02:00 d/control: declare compliance to standards version 4.7.2. - - - - - 394278ae by Étienne Mollier at 2025-05-22T22:07:44+02:00 d/rules: fix calculate_diversity.R script not executable. - - - - - 4cdabfb3 by Étienne Mollier at 2025-05-22T22:09:28+02:00 d/copyright: clarify the need for repack. Gbp-Dch: ignore - - - - - d9884854 by Étienne Mollier at 2025-05-22T22:29:54+02:00 d/control: metaphlan depends on r-base-core. - - - - - 85c192c4 by Étienne Mollier at 2025-05-22T22:31:50+02:00 d/changelog: ready for upload to unstable. - - - - - 4 changed files: - debian/changelog - debian/control - debian/copyright - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,18 +1,22 @@ -metaphlan (4.0.4+ds-1) UNRELEASED; urgency=medium +metaphlan (4.0.4+ds-1) unstable; urgency=medium + + * Team upload. [ Harish chavre ] - * patch added Replace distutils.version with packaging.version for Python 3.12+ compatibility + * patch added Replace distutils.version with packaging.version for + Python 3.12+ compatibility * Add autopkgtest for metaphlan + Closes: #1035175 * Add copyright info for autopkgtest data in debian/copyright * created gbp.conf to embed the test data - * New upstream version 4.0.4 - * New upstream version 4.0.4 * move large test data to separate debian-tests-data component - * modify copyright to add debian-tests data in files - * patch added Replace distutils.version with packaging.version for Python 3.12+ compatibility - Closes: #1035175 - -- Harish <[email protected]> Thu, 22 May 2025 04:43:07 +0000 + [ Étienne Mollier ] + * d/rules: fix calculate_diversity.R script not executable. + * d/control: metaphlan depends on r-base-core. + * d/control: declare compliance to standards version 4.7.2. + + -- Étienne Mollier <[email protected]> Thu, 22 May 2025 22:30:27 +0200 metaphlan (4.0.4-1) unstable; urgency=medium ===================================== debian/control ===================================== @@ -10,7 +10,7 @@ Build-Depends: debhelper-compat (= 13), bowtie2, python3-setuptools, python3-biopython <!nocheck> -Standards-Version: 4.6.2 +Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/metaphlan Vcs-Git: https://salsa.debian.org/med-team/metaphlan.git Homepage: https://github.com/biobakery/MetaPhlAn @@ -25,6 +25,7 @@ Depends: ${python3:Depends}, python3-msgpack, python3-pandas, python3-packaging, + r-base-core, bowtie2 Conflicts: metaphlan2 Provides: metaphlan2 ===================================== debian/copyright ===================================== @@ -1,23 +1,26 @@ -Files: debian-tests-data/* -Copyright: 2024 Segata Lab -License: Expat -Comment: This test data was obtained from the MetaPhlAn4 upstream database at - http://cmprod1.cibio.unitn.it/biobakery4/metaphlan_databases/ - Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: MetaPhlAn Upstream-Contact: Nicola Segata <[email protected]> Source: https://github.com/biobakery/MetaPhlAn +Comment: Repack suffix may be dropped on next upstream release. + It was introduced to differentiate upstream 4.0.4 without and with test + data. Files: * Copyright: 2012-2022 Duy Tin Truong, Nicola Segata and Curtis Huttenhower -License: expat +License: Expat + +Files: debian-tests-data/* +Copyright: 2024 Segata Lab +License: Expat +Comment: This test data was obtained from the MetaPhlAn4 upstream database at + http://cmprod1.cibio.unitn.it/biobakery4/metaphlan_databases/ Files: debian/* Copyright: 2016-2022 Andreas Tille <[email protected]> -License: expat +License: Expat -License: expat +License: Expat Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including ===================================== debian/rules ===================================== @@ -18,3 +18,5 @@ override_dh_installchangelogs: override_dh_fixperms: dh_fixperms find debian/$(DEB_SOURCE) -name "*.txt" -exec chmod -x \{\} \; + find debian/$(DEB_SOURCE) -name "calculate_diversity.R" \ + -exec chmod +x \{\} \; View it on GitLab: https://salsa.debian.org/med-team/metaphlan/-/compare/eae87a24ac582ef7e35110bd5c5851d708e4706e...85c192c417bb69d1211a8ab6517d5c0a157f2b71 -- View it on GitLab: https://salsa.debian.org/med-team/metaphlan/-/compare/eae87a24ac582ef7e35110bd5c5851d708e4706e...85c192c417bb69d1211a8ab6517d5c0a157f2b71 You're receiving this email because of your account on salsa.debian.org.
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