Steffen Möller pushed to branch upstream at Debian Med / htslib
Commits: e1566aaf by Steffen Moeller at 2025-08-17T21:04:46+02:00 New upstream version 1.22.1+ds - - - - - 102 changed files: - INSTALL - LICENSE - Makefile - NEWS - annot-tsv.1 - annot-tsv.c - bcf_sr_sort.c - bcf_sr_sort.h - bgzf.c - bgzip.1 - bgzip.c - config.mk.in - configure.ac - cram/cram_codecs.c - cram/cram_decode.c - cram/cram_encode.c - cram/cram_index.c - cram/cram_io.c - cram/cram_io.h - cram/cram_structs.h - cram/open_trace_file.c - cram/open_trace_file.h - header.c - hfile.c - hfile_libcurl.c - hts.c - hts_internal.h - htsfile.1 - htsfile.c - htslib-s3-plugin.7 - htslib.pc.in - htslib/bgzf.h - htslib/hts.h - htslib/hts_defs.h - htslib/kstring.h - htslib/sam.h - htslib/synced_bcf_reader.h - htslib/thread_pool.h - htslib/vcf.h - m4/hts_hide_dynamic_syms.m4 - + ref_cache/cmsg_wrap.c - + ref_cache/cmsg_wrap.h - + ref_cache/http_parser.c - + ref_cache/http_parser.h - + ref_cache/listener.c - + ref_cache/listener.h - + ref_cache/log_files.c - + ref_cache/log_files.h - + ref_cache/main.c - + ref_cache/misc.c - + ref_cache/misc.h - + ref_cache/options.h - + ref_cache/ping.c - + ref_cache/ping.h - + ref_cache/poll_wrap.h - + ref_cache/poll_wrap_epoll.c - + ref_cache/poll_wrap_poll.c - + ref_cache/ref-cache.1 - + ref_cache/ref_files.c - + ref_cache/ref_files.h - + ref_cache/request_handler.c - + ref_cache/request_handler.h - + ref_cache/sendfile_wrap.c - + ref_cache/sendfile_wrap.h - + ref_cache/server.c - + ref_cache/server.h - + ref_cache/transaction.c - + ref_cache/transaction.h - + ref_cache/types.h - + ref_cache/upstream.c - + ref_cache/upstream.h - sam.c - sam_internal.h - simd.c - synced_bcf_reader.c - tabix.1 - tabix.c - tbx.c - + test/annot-tsv/dst.14.txt - + test/annot-tsv/out.14.1.txt - + test/annot-tsv/out.14.2.txt - + test/annot-tsv/src.14.txt - test/compare_sam.pl - + test/ref_cache/ce_m5.sam - test/sam.c - test/test-bcf-sr.c - test/test-bcf-sr.pl - test/test-bcf_set_variant_type.c - test/test-vcf-api.c - test/test.pl - test/test_khash.c - test/test_kstring.c - test/thrash_threads4.c - test/thrash_threads6.c - test/thrash_threads7.c - + test/vcf44_1.expected - + test/vcf44_1.vcf - test/with-shlib.sh - + test/xx#u.sam - thread_pool.c - vcf.c - version.sh The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/htslib/-/commit/e1566aaf090c81c60a07f65f66eb4f5bcdbc95ee -- View it on GitLab: https://salsa.debian.org/med-team/htslib/-/commit/e1566aaf090c81c60a07f65f66eb4f5bcdbc95ee You're receiving this email because of your account on salsa.debian.org.
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