Author: lkajan-guest Date: 2012-07-13 15:55:20 +0000 (Fri, 13 Jul 2012) New Revision: 11792
Added: trunk/packages/norsp/trunk/debian/README.source Modified: trunk/packages/norsp/trunk/debian/changelog trunk/packages/norsp/trunk/debian/control trunk/packages/norsp/trunk/debian/copyright trunk/packages/norsp/trunk/debian/rules trunk/packages/norsp/trunk/debian/upstream trunk/packages/norsp/trunk/debian/watch Log: reviewed Debianization Added: trunk/packages/norsp/trunk/debian/README.source =================================================================== --- trunk/packages/norsp/trunk/debian/README.source (rev 0) +++ trunk/packages/norsp/trunk/debian/README.source 2012-07-13 15:55:20 UTC (rev 11792) @@ -0,0 +1,7 @@ +norsp for Debian +================ + +Uncompressed examples +--------------------- +dh_compress excludes examples that appear on the man page. +This is in order to allow the example to work as it is pasted on the command like from the man page. Modified: trunk/packages/norsp/trunk/debian/changelog =================================================================== --- trunk/packages/norsp/trunk/debian/changelog 2012-07-13 14:55:20 UTC (rev 11791) +++ trunk/packages/norsp/trunk/debian/changelog 2012-07-13 15:55:20 UTC (rev 11792) @@ -1,4 +1,4 @@ -norsp (1.0.3-1) UNRELEASED; urgency=low +norsp (1.0.4-1) UNRELEASED; urgency=low * Initial release (Closes: #680367) Modified: trunk/packages/norsp/trunk/debian/control =================================================================== --- trunk/packages/norsp/trunk/debian/control 2012-07-13 14:55:20 UTC (rev 11791) +++ trunk/packages/norsp/trunk/debian/control 2012-07-13 15:55:20 UTC (rev 11792) @@ -3,28 +3,28 @@ Priority: extra Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Laszlo Kajan <[email protected]>, Eva Reisinger <[email protected]> -DM-Upload-Allowed: yes -Build-Depends: debhelper (>= 8), autotools-dev +Build-Depends: debhelper (>= 8) Standards-Version: 3.9.3 Homepage: https://rostlab.org/owiki/index.php/NORSp_-_predictor_of_NOn-Regular_Secondary_Structure +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/norsp/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/norsp/trunk/ +DM-Upload-Allowed: yes Package: norsp Architecture: all -Depends: ${misc:Depends} +Depends: ${misc:Depends}, perl Recommends: pp-popularity-contest, profphd, profphd-utils, ncoils (>= 2002-3) -Description: predictor of NOn-Regular Secondary Structure - Many structurally flexible regions play important roles in biological - processes. It has been shown that extended loopy regions are very abundant in - nature, and that they are evolutionarily conserved. NORSp is a publicly - available predictor for disordered regions in protein. Specifically, it - predicts long regions with no regular secondary structure. Upon user - submission of protein sequence, NORSp will analyse the protein about its - secondary structure, and presence of transmembrane helices and coiled-coil. It - will then return e-mail to user about the presence and position of disordered - regions.NORSp can be useful for biologists in several ways. For example, +Description: predictor of non-regular secondary structure + NORSp is a publicly available predictor for disordered regions in proteins. + Specifically, it predicts long regions with no regular secondary structure. + Upon submission of a protein sequence, NORSp analyses the protein about its + secondary structure, the presence of transmembrane helices and coiled-coils. + It then returns the presence and position of disordered regions. + . + NORSp can be useful for biologists in several ways. For example, crystallographers can check whether their proteins contain NORS regions and make the decision about whether to proceed with the experiments since NORS proteins may be difficult to crystallise, as demonstrated by the their low occurrence in PDB. Biologists interested in protein structure-function relationship may also find it interesting to verify whether the - protein-protein interaction sites coincide with NORS region. + protein-protein interaction sites coincide with NORS regions. Modified: trunk/packages/norsp/trunk/debian/copyright =================================================================== --- trunk/packages/norsp/trunk/debian/copyright 2012-07-13 14:55:20 UTC (rev 11791) +++ trunk/packages/norsp/trunk/debian/copyright 2012-07-13 15:55:20 UTC (rev 11792) @@ -1,12 +1,19 @@ Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: norsp -Source: http://www.predictprotein.org +Upstream-Contact: Guy Yachdav <[email protected]> +Source: ftp://rostlab.org/norsp/ +Files: debian/* +Copyright: 2010 Guy Yachdav <[email protected]> + 2012 Laszlo Kajan <[email protected]> + 2012 Eva Reisinger <[email protected]> +License: GPL-3+ + Files: * -Copyright: 2010 ROSTLAB +Copyright: 2003 Jinfeng Liu <[email protected]> + 2003 Burkhard Rost License: GPL-3+ - License: GPL-3+ This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by Modified: trunk/packages/norsp/trunk/debian/rules =================================================================== --- trunk/packages/norsp/trunk/debian/rules 2012-07-13 14:55:20 UTC (rev 11791) +++ trunk/packages/norsp/trunk/debian/rules 2012-07-13 15:55:20 UTC (rev 11792) @@ -3,6 +3,10 @@ # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 +.PHONY: override_dh_compress +override_dh_compress: + dh_compress -Xexamples/query.fasta -Xexamples/query.hssp -Xexamples/query.prof -Xexamples/query.phdHtm -Xexamples/query.coils + %: dh $@ Modified: trunk/packages/norsp/trunk/debian/upstream =================================================================== --- trunk/packages/norsp/trunk/debian/upstream 2012-07-13 14:55:20 UTC (rev 11791) +++ trunk/packages/norsp/trunk/debian/upstream 2012-07-13 15:55:20 UTC (rev 11792) @@ -1,13 +1,13 @@ Bug-Database: https://rostlab.org/bugzilla3/buglist.cgi?product=norsp Bug-Submit: https://rostlab.org/bugzilla3/enter_bug.cgi?product=norsp Reference: - Author: Liu J and Rost B - Title: NORSp Predictions of long regions without regular secondary structure + Author: Jinfeng Liu and Burkhard Rost + Title: 'NORSp: Predictions of long regions without regular secondary structure.' Journal: Nucleic Acids Res Year: 2003 - Volume: 1 - Number: 31 + Volume: 31 + Number: 13 + Pages: 3833-3835 PMID: 12824431 - Type: article - URL: http://www.ncbi.nlm.nih.gov/pubmed?term=norsp - Eprint: http://nar.oxfordjournals.org/content/31/13/3833.long + URL: http://nar.oxfordjournals.org/content/31/13/3833.long + Eprint: http://nar.oxfordjournals.org/content/31/13/3833.full.pdf Modified: trunk/packages/norsp/trunk/debian/watch =================================================================== --- trunk/packages/norsp/trunk/debian/watch 2012-07-13 14:55:20 UTC (rev 11791) +++ trunk/packages/norsp/trunk/debian/watch 2012-07-13 15:55:20 UTC (rev 11792) @@ -1,4 +1,3 @@ -# watch control file for uscan version=3 -ftp://rostlab.org/norsp/norsp-(.+)\.tar\.gz debian uupdate +ftp://rostlab.org/norsp/norsp-([0-9.]+)\.tar\.gz debian uupdate _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
