Nilesh Patra pushed to branch master at Debian Med / spades
Commits: b778a093 by Nilesh Patra at 2025-09-20T03:19:02+05:30 Fixup FTBFS with gcc-15 (Closes: #1097913) - - - - - b8a0ace7 by Nilesh Patra at 2025-09-20T03:19:02+05:30 Upload to unstable - - - - - 3 changed files: - debian/changelog - + debian/patches/gcc-15.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +spades (4.0.0+really3.15.5+dfsg-2) unstable; urgency=medium + + [ Pierre Gruet ] + * Adding d/README.source to warn against future uploads of spades 4.x + + [ Nilesh Patra ] + * Fixup FTBFS with gcc-15 (Closes: #1097913) + + -- Nilesh Patra <[email protected]> Sat, 20 Sep 2025 02:36:42 +0530 + spades (4.0.0+really3.15.5+dfsg-1) unstable; urgency=medium * Team upload ===================================== debian/patches/gcc-15.patch ===================================== @@ -0,0 +1,76 @@ +Description: Fix compilation with gcc 15 +Author: Nilesh Patra <[email protected]> +Last-Update: 2025-09-20 +--- a/assembler/src/common/io/binary/binary.hpp ++++ b/assembler/src/common/io/binary/binary.hpp +@@ -11,6 +11,7 @@ + #include <map> + #include <unordered_map> + #include <memory> ++#include <cstdint> + + #include "utils/verify.hpp" + #include "io/binary/access.hpp" +--- a/assembler/src/common/utils/ph_map/key_with_hash.hpp ++++ b/assembler/src/common/utils/ph_map/key_with_hash.hpp +@@ -61,7 +61,7 @@ + bool operator==(const SimpleKeyWithHash &that) const { + VERIFY_DEV(&this->hash_ == &that.hash_); + if (this->ready_ && that.ready_) +- return this->idx_ == that.idx_ && this->is_minimal_ == that.is_minimal_; ++ return this->idx_ == that.idx_; + return this->key_ == that.key_; + } + +--- a/assembler/src/common/adt/flat_map.hpp ++++ b/assembler/src/common/adt/flat_map.hpp +@@ -173,7 +173,7 @@ + } + + void swap(flat_map &other) { +- data_.swap(other.data); ++ data_.swap(other.data_); + } + + void clear() { +--- a/assembler/src/common/adt/flat_set.hpp ++++ b/assembler/src/common/adt/flat_set.hpp +@@ -124,7 +124,7 @@ + return data_.erase(iterator_const_cast(first), iterator_const_cast(last)); + } + +- void swap(flat_set &other) { data_.swap(other.data); } ++ void swap(flat_set &other) { data_.swap(other.data_); } + + void clear() { data_.clear(); } + +--- a/assembler/src/common/hmm/hmmmatcher.hpp ++++ b/assembler/src/common/hmm/hmmmatcher.hpp +@@ -11,6 +11,7 @@ + + #include <memory> + #include "hmmer_fwd.h" ++#include <cstdint> + + namespace hmmer { + +--- a/assembler/src/common/io/reads/read_stream.hpp ++++ b/assembler/src/common/io/reads/read_stream.hpp +@@ -13,6 +13,7 @@ + #include <memory> + #include <typeinfo> + #include <typeindex> ++#include <cstdint> + + namespace io { + +--- a/assembler/ext/include/btree/btree.h ++++ b/assembler/ext/include/btree/btree.h +@@ -114,6 +114,7 @@ + #include <ostream> + #include <string> + #include <utility> ++#include <cstdint> + + #ifndef NDEBUG + #define BTREE_NDEBUG 0 ===================================== debian/patches/series ===================================== @@ -23,3 +23,4 @@ fix-privacy-breaches.patch typos.patch python3.12.patch raw_regex_pattern.patch +gcc-15.patch View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/ee77c64d210d77d9bab30b98a5ab1f5b35974821...b8a0ace7e64d22795f54f0eee0d63a61dded035f -- View it on GitLab: https://salsa.debian.org/med-team/spades/-/compare/ee77c64d210d77d9bab30b98a5ab1f5b35974821...b8a0ace7e64d22795f54f0eee0d63a61dded035f You're receiving this email because of your account on salsa.debian.org.
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