Santiago Vila pushed to branch master at Debian Med / ampliconnoise
Commits: b3a7efdd by Adrian Bunk at 2025-09-21T18:40:00+02:00 Fix FTBFS with GCC 15. Closes: #1096305. - - - - - ead01c50 by Santiago Vila at 2025-09-21T18:45:00+02:00 Create bin directory before dh_auto_clean to make Salsa CI happy. - - - - - cd5b9192 by Santiago Vila at 2025-09-21T18:50:00+02:00 Update standards-version. - - - - - 85177490 by Santiago Vila at 2025-09-21T18:55:00+02:00 Upload for unstable as 1.29-16 - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/gcc-15.patch - debian/patches/series - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,14 @@ +ampliconnoise (1.29-16) unstable; urgency=medium + + * Team upload. + [ Adrian Bunk ] + * Fix FTBFS with GCC 15. Closes: #1096305. + [ Santiago Vila ] + * Create bin directory before dh_auto_clean to make Salsa CI happy. + * Update standards-version. + + -- Santiago Vila <[email protected]> Sun, 21 Sep 2025 18:55:00 +0200 + ampliconnoise (1.29-15) unstable; urgency=medium * d/t/Run.sh: remove openmpi specific --use-hwthread-cpu argument. ===================================== debian/control ===================================== @@ -8,7 +8,7 @@ Priority: optional Build-Depends: debhelper-compat (= 13), libgsl-dev, mpi-default-dev -Standards-Version: 4.7.0 +Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/ampliconnoise Vcs-Git: https://salsa.debian.org/med-team/ampliconnoise.git Homepage: https://github.com/lanzen/ampliconnoise ===================================== debian/patches/gcc-15.patch ===================================== @@ -0,0 +1,26 @@ +Description: Fix FTBFS with GCC 15 +Author: Adrian Bunk <[email protected]> +Bug-Debian: https://bugs.debian.org/1096305 + +--- ampliconnoise-1.29.orig/Perseus/Perseus.h ++++ ampliconnoise-1.29/Perseus/Perseus.h +@@ -148,7 +148,7 @@ void broadcastData(t_Data *ptData); + + double needlemanWunschN(const char* acA, const char* acB, int nLenA, int nLenB, int nM); + +-void initLookUp(); ++void initLookUp(t_Params *ptParams); + + char* getChimera(int *pnCLength, t_Align* ptA, t_Align* ptB, int nSplit, int nLenI); + +--- ampliconnoise-1.29.orig/PerseusD/PerseusD.h ++++ ampliconnoise-1.29/PerseusD/PerseusD.h +@@ -173,7 +173,7 @@ void broadcastData(t_Data *ptData); + + double needlemanWunschN(const char* acA, const char* acB, int nLenA, int nLenB, int nM); + +-void initLookUp(); ++void initLookUp(t_Params *ptParams); + + char* getChimera(int *pnCLength, t_Align* ptA, t_Align* ptB, int nSplit, int nLenI); + ===================================== debian/patches/series ===================================== @@ -6,3 +6,4 @@ mayhem.patch fix_sequence_of_function_definitions.patch fix_missing_header.patch gcc-14.patch +gcc-15.patch ===================================== debian/rules ===================================== @@ -23,6 +23,9 @@ override_dh_auto_install: dh_install Data/* /usr/share/ampliconnoise/Data/ dh_install Scripts/* /usr/share/ampliconnoise/Scripts/ +execute_before_dh_auto_clean: + mkdir -p bin + #A typo in the upstream Makefile prevents proper cleaning. override_dh_clean: dh_clean View it on GitLab: https://salsa.debian.org/med-team/ampliconnoise/-/compare/6d04fd95e4189c01437e5bfe917df8b5b4ae5f06...85177490dbe8a3e35082224dd1737f920e1ed750 -- View it on GitLab: https://salsa.debian.org/med-team/ampliconnoise/-/compare/6d04fd95e4189c01437e5bfe917df8b5b4ae5f06...85177490dbe8a3e35082224dd1737f920e1ed750 You're receiving this email because of your account on salsa.debian.org.
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