Étienne Mollier pushed to branch master at Debian Med / pbbam
Commits: bda93a02 by Étienne Mollier at 2025-10-05T23:46:09+02:00 d/control: build depends on libboost-iostreams-dev. Closes: #1117414 - - - - - 0923c896 by Étienne Mollier at 2025-10-05T23:46:41+02:00 d/control: build depends on pkgconf. - - - - - 879294fe by Étienne Mollier at 2025-10-05T23:47:34+02:00 d/patches/*: normalize Last-Update timestamp. - - - - - 570b4a7f by Étienne Mollier at 2025-10-05T23:55:21+02:00 d/watch: convert to watch file version 5. - - - - - 627942da by Étienne Mollier at 2025-10-05T23:55:51+02:00 d/control: declare compliance to standards version 4.7.2. - - - - - e5aa26cb by Étienne Mollier at 2025-10-05T23:56:07+02:00 d/control: drop redundant Rules-Requires-Root: no. - - - - - 89c74f3d by Étienne Mollier at 2025-10-05T23:56:53+02:00 d/changelog: ready for upload to unstable. - - - - - 6 changed files: - debian/changelog - debian/control - debian/patches/python3.patch - debian/patches/results_with_latest_samtools.patch - debian/patches/use_debian_packaged_python3-cram.patch - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,15 @@ +pbbam (2.4.0+dfsg-2) unstable; urgency=medium + + * Team upload. + * d/control: build depends on libboost-iostreams-dev. (Closes: #1117414) + * d/control: build depends on pkgconf. + * d/patches/*: normalize Last-Update timestamp. + * d/watch: convert to watch file version 5. + * d/control: declare compliance to standards version 4.7.2. + * d/control: drop redundant Rules-Requires-Root: no. + + -- Étienne Mollier <[email protected]> Sun, 05 Oct 2025 23:56:29 +0200 + pbbam (2.4.0+dfsg-1) unstable; urgency=medium * New upstream version ===================================== debian/control ===================================== @@ -7,9 +7,10 @@ Build-Depends: debhelper-compat (= 13), dh-exec, d-shlibs, meson, - pkg-config, + pkgconf, cmake, libboost-dev, + libboost-iostreams-dev, zlib1g-dev, libssl-dev, libhts-dev, @@ -17,11 +18,10 @@ Build-Depends: debhelper-compat (= 13), python3-cram, libgtest-dev <!nocheck>, samtools <!nocheck> -Standards-Version: 4.6.2 +Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/pbbam Vcs-Git: https://salsa.debian.org/med-team/pbbam.git Homepage: https://pbbam.readthedocs.org/en/latest/index.html -Rules-Requires-Root: no Package: pbbamtools Architecture: any ===================================== debian/patches/python3.patch ===================================== @@ -1,5 +1,5 @@ Author: Andreas Tille <[email protected]> -Last-Update: Sun, 04 Aug 2019 09:15:35 +0200 +Last-Update: 2019-08-04 Description: Use Python3 in build time test suite --- a/tests/scripts/generate_data.py ===================================== debian/patches/results_with_latest_samtools.patch ===================================== @@ -1,6 +1,6 @@ Description: Adapt test results to latest samtools Author: Andreas Tille <[email protected]> -Last-Update: Fri, 13 Dec 2019 21:50:03 +0100 +Last-Update: 2019-12-13 --- a/tests/src/cram/pbmerge_pacbio_ordering.t.in +++ b/tests/src/cram/pbmerge_pacbio_ordering.t.in ===================================== debian/patches/use_debian_packaged_python3-cram.patch ===================================== @@ -1,5 +1,5 @@ Author: Andreas Tille <[email protected]> -Last-Update: Sun, 04 Aug 2019 09:15:35 +0200 +Last-Update: 2019-08-04 Description: Use python3-cram instead of cram code copy --- pbbam.orig/tests/meson.build ===================================== debian/watch ===================================== @@ -1,4 +1,12 @@ -version=4 +Version: 5 -opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz,filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%" \ - https://github.com/PacificBiosciences/pbbam/tags .*/v?@ANY_VERSION@@ARCHIVE_EXT@ +Source: https://api.github.com/repos/PacificBiosciences/pbbam/git/matching-refs/tags/ +Matching-Pattern: https://api.github.com/repos/[^/]+/[^/]+/git/refs/tags/v@ANY_VERSION@ +Download-Url-Mangle: s%(api.github.com/repos/[^/]+/[^/]+)/git/refs/%$1/tarball/refs/%g +Filenamemangle: s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz% +Search-Mode: plain +Pgp-Mode: plain +Compression: xz +Repack: yes +Repacksuffix: +dfsg +Dversionmangle: s/\+dfsg//g View it on GitLab: https://salsa.debian.org/med-team/pbbam/-/compare/c057a98c54a07403361c88dd3f061d2f1f43427a...89c74f3d8268c86eaea6d8673f676c5302e8f194 -- View it on GitLab: https://salsa.debian.org/med-team/pbbam/-/compare/c057a98c54a07403361c88dd3f061d2f1f43427a...89c74f3d8268c86eaea6d8673f676c5302e8f194 You're receiving this email because of your account on salsa.debian.org.
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