Étienne Mollier pushed to branch master at Debian Med / nibabel
Commits: 54a7841e by Étienne Mollier at 2025-10-24T21:19:17+02:00 scipy-1.16.patch: new: fix tests with scipy 1.16. Closes: #1109953 - - - - - b8eede75 by Étienne Mollier at 2025-10-24T21:19:50+02:00 d/patches/*: normalize Last-Update timestamp. - - - - - f6468b00 by Étienne Mollier at 2025-10-24T21:21:21+02:00 d/watch: convert to v5 Github template. - - - - - 4a9a16d4 by Étienne Mollier at 2025-10-24T21:22:36+02:00 scipy-1.16.patch: dep3 header. Gbp-Dch: ignore - - - - - 9505de41 by Étienne Mollier at 2025-10-24T21:23:19+02:00 d/control: drop redundant Rules-Requires-Root: no. - - - - - 880650b1 by Étienne Mollier at 2025-10-24T21:23:38+02:00 d/control: declare compliance to standards version 4.7.2. - - - - - 0bcfa7bb by Étienne Mollier at 2025-10-24T21:24:08+02:00 d/changelog: ready for upload to unstable. - - - - - 8 changed files: - debian/changelog - debian/control - debian/patches/deb_localmathjax - debian/patches/deb_notexext - debian/patches/python3.10.patch - + debian/patches/scipy-1.16.patch - debian/patches/series - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +nibabel (5.3.2-3) unstable; urgency=medium + + * scipy-1.16.patch: new: fix tests with scipy 1.16. (Closes: #1109953) + * d/patches/*: normalize Last-Update timestamp. + * d/watch: convert to v5 Github template. + * d/control: drop redundant Rules-Requires-Root: no. + * d/control: declare compliance to standards version 4.7.2. + + -- Étienne Mollier <[email protected]> Fri, 24 Oct 2025 21:23:58 +0200 + nibabel (5.3.2-2) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -23,11 +23,10 @@ Build-Depends: debhelper-compat (= 13), python3-numpydoc, python3-pytest <!nocheck>, python3-pytest-httpserver <!nocheck> -Standards-Version: 4.7.0 +Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/nibabel Vcs-Git: https://salsa.debian.org/med-team/nibabel.git Homepage: https://nipy.org/nibabel/ -Rules-Requires-Root: no Package: python3-nibabel Architecture: all ===================================== debian/patches/deb_localmathjax ===================================== @@ -1,5 +1,5 @@ Author: Yaroslav O. Halchenko -Last-Update: 2015-11-02 11:35:58 -0500 +Last-Update: 2015-11-02 Description: Use Debian packaged MathJax --- a/doc/source/conf.py ===================================== debian/patches/deb_notexext ===================================== @@ -1,5 +1,5 @@ Author: Yaroslav O. Halchenko -Last-Update: 2016-07-28 22:47:34 -0400 +Last-Update: 2016-07-28 Description: Do not fail if there is no texext extension for sphinx --- a/doc/source/conf.py ===================================== debian/patches/python3.10.patch ===================================== @@ -2,7 +2,7 @@ Description: Fix Python3.10 issue The 'str' type is expected to always be encoded utf-8, so it is not possible to decode an from any other encodings anymore. Author: Étienne Mollier <[email protected]> -Last-Update: Wed, 22 Dec 2021 23:11:18 +0100 +Last-Update: 2021-12-22 Origin: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=868229#65 --- a/nibabel/cmdline/dicomfs.py ===================================== debian/patches/scipy-1.16.patch ===================================== @@ -0,0 +1,29 @@ +Description: fix test failures with scipy 1.16. +Author: Étienne Mollier <[email protected]> +Bug: https://github.com/nipy/nibabel/issues/1428 +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1109953 +Last-Update: 2025-10-24 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- nibabel.orig/nibabel/tests/test_processing.py ++++ nibabel/nibabel/tests/test_processing.py +@@ -169,8 +169,7 @@ + exp_out[1:, :, :] = data[1, :, :] + assert_almost_equal(out.dataobj, exp_out) + out = resample_from_to(img, trans_p_25_img) +- with pytest.warns(UserWarning): # Suppress scipy warning +- exp_out = spnd.affine_transform(data, [1, 1, 1], [-0.25, 0, 0], order=3) ++ exp_out = spnd.affine_transform(data, [1, 1, 1], [-0.25, 0, 0], order=3) + assert_almost_equal(out.dataobj, exp_out) + # Test cval + out = resample_from_to(img, trans_img, cval=99) +@@ -275,8 +274,7 @@ + assert_array_equal(out_img.dataobj, np.flipud(data)) + # Subsample voxels + out_img = resample_to_output(Nifti1Image(data, np.diag([4, 5, 6, 1]))) +- with pytest.warns(UserWarning): # Suppress scipy warning +- exp_out = spnd.affine_transform(data, [1 / 4, 1 / 5, 1 / 6], output_shape=(5, 11, 19)) ++ exp_out = spnd.affine_transform(data, [1 / 4, 1 / 5, 1 / 6], output_shape=(5, 11, 19)) + assert_array_equal(out_img.dataobj, exp_out) + # Unsubsample with voxel sizes + out_img = resample_to_output(Nifti1Image(data, np.diag([4, 5, 6, 1])), [4, 5, 6]) ===================================== debian/patches/series ===================================== @@ -5,3 +5,4 @@ python3.10.patch skip-test-removalschedule.patch skip-armel-test-nan2zero.patch pr1383.patch +scipy-1.16.patch ===================================== debian/watch ===================================== @@ -1,4 +1,5 @@ -# Compulsory line, this is a version 3 file -version=4 -opts=filenamemangle=s/.+\/v?(.*)\.tar\.gz/nibabel-$1.tar.gz/ \ - https://github.com/nipy/nibabel/tags .*/v?(\d[\d\.]+)\.tar\.gz +Version: 5 + +Template: Github +Owner: nipy +Project: nibabel View it on GitLab: https://salsa.debian.org/med-team/nibabel/-/compare/71c68e928fc54eb66fbfaf8a0791ce557ff2861d...0bcfa7bb9f11377273b35d118abaff7d3a70fdbf -- View it on GitLab: https://salsa.debian.org/med-team/nibabel/-/compare/71c68e928fc54eb66fbfaf8a0791ce557ff2861d...0bcfa7bb9f11377273b35d118abaff7d3a70fdbf You're receiving this email because of your account on salsa.debian.org.
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