Étienne Mollier pushed to branch master at Debian Med / paleomix
Commits: 8063bf61 by Étienne Mollier at 2025-11-02T22:33:53+01:00 New upstream version 1.3.10 - - - - - 1f3abfe7 by Étienne Mollier at 2025-11-02T22:33:55+01:00 Update upstream source from tag 'upstream/1.3.10' Update to upstream version '1.3.10' with Debian dir dd7913bb3766ea332b8bd80c3515291776ab1c0f - - - - - 344d8986 by Étienne Mollier at 2025-11-02T22:35:54+01:00 d/copyright: update copyright years. - - - - - 18c690e8 by Étienne Mollier at 2025-11-02T22:36:30+01:00 python3.11.patch: delete: issue fixed upstream. - - - - - f1c5e940 by Étienne Mollier at 2025-11-02T22:37:15+01:00 shlex.patch: delete: issue fixed upstream. - - - - - e659e2b6 by Étienne Mollier at 2025-11-02T22:37:54+01:00 d/control: drop redundant Rules-Requires-Root: no. - - - - - d27e5faa by Étienne Mollier at 2025-11-02T22:38:16+01:00 d/control: declare compliance to standards version 4.7.2. - - - - - 23ffcf3b by Étienne Mollier at 2025-11-02T22:42:14+01:00 d/watch: convert to v5 Github template. - - - - - ec2b0902 by Étienne Mollier at 2025-11-02T22:43:05+01:00 d/changelog: ready for upload to unstable. - - - - - 50 changed files: - + .readthedocs.yaml - CHANGES.md - debian/changelog - debian/control - debian/copyright - − debian/patches/python3.11.patch - debian/patches/series - − debian/patches/shlex.patch - debian/watch - docs/conf.py - docs/installation.rst - paleomix/__init__.py - paleomix/atomiccmd/pprint.py - + paleomix/common/resources.py - paleomix/common/rtools.py - paleomix/main.py - paleomix/nodes/formats.py - paleomix/nodes/mapdamage.py - paleomix/pipelines/bam/config.py - paleomix/pipelines/bam/mkfile.py - paleomix/pipelines/bam/pipeline.py - paleomix/pipelines/phylo/example.py - paleomix/pipelines/phylo/mkfile.py - paleomix/pipelines/phylo/parts/msa.py - paleomix/pipelines/zonkey/build_db.py - paleomix/pipelines/zonkey/build_mito.py - paleomix/pipelines/zonkey/common.py - paleomix/pipelines/zonkey/parts/mitochondria.py - paleomix/pipelines/zonkey/parts/nuclear.py - paleomix/pipelines/zonkey/parts/report.py - paleomix/pipelines/zonkey/parts/summary.py - paleomix/pipelines/zonkey/pipeline.py - paleomix/resources/__init__.py - + paleomix/resources/examples/__init__.py - paleomix/resources/reports/zonkey/report.css - paleomix/tools/cleanup.py - paleomix/tools/coverage.py - paleomix/tools/depths.py - paleomix/tools/dupcheck.py - paleomix/tools/factory.py - paleomix/tools/gtf_to_bed.py - paleomix/tools/rmdup_collapsed.py - + paleomix/tools/rscript.py - paleomix/tools/vcf_filter.py - paleomix/tools/vcf_to_fasta.py - paleomix_environment.yaml - setup.py - tests/atomiccmd_test/command_test.py - tests/tools_test/factory_test.py - tox.ini The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/paleomix/-/compare/ccbb6a565f6d38cd57730cd8638e9b872ae8aad4...ec2b0902d3f58d683ae762bcf2b1037e46dd79bd -- View it on GitLab: https://salsa.debian.org/med-team/paleomix/-/compare/ccbb6a565f6d38cd57730cd8638e9b872ae8aad4...ec2b0902d3f58d683ae762bcf2b1037e46dd79bd You're receiving this email because of your account on salsa.debian.org.
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