Étienne Mollier pushed to branch upstream at Debian Med / paleomix
Commits: 8063bf61 by Étienne Mollier at 2025-11-02T22:33:53+01:00 New upstream version 1.3.10 - - - - - 43 changed files: - + .readthedocs.yaml - CHANGES.md - docs/conf.py - docs/installation.rst - paleomix/__init__.py - paleomix/atomiccmd/pprint.py - + paleomix/common/resources.py - paleomix/common/rtools.py - paleomix/main.py - paleomix/nodes/formats.py - paleomix/nodes/mapdamage.py - paleomix/pipelines/bam/config.py - paleomix/pipelines/bam/mkfile.py - paleomix/pipelines/bam/pipeline.py - paleomix/pipelines/phylo/example.py - paleomix/pipelines/phylo/mkfile.py - paleomix/pipelines/phylo/parts/msa.py - paleomix/pipelines/zonkey/build_db.py - paleomix/pipelines/zonkey/build_mito.py - paleomix/pipelines/zonkey/common.py - paleomix/pipelines/zonkey/parts/mitochondria.py - paleomix/pipelines/zonkey/parts/nuclear.py - paleomix/pipelines/zonkey/parts/report.py - paleomix/pipelines/zonkey/parts/summary.py - paleomix/pipelines/zonkey/pipeline.py - paleomix/resources/__init__.py - + paleomix/resources/examples/__init__.py - paleomix/resources/reports/zonkey/report.css - paleomix/tools/cleanup.py - paleomix/tools/coverage.py - paleomix/tools/depths.py - paleomix/tools/dupcheck.py - paleomix/tools/factory.py - paleomix/tools/gtf_to_bed.py - paleomix/tools/rmdup_collapsed.py - + paleomix/tools/rscript.py - paleomix/tools/vcf_filter.py - paleomix/tools/vcf_to_fasta.py - paleomix_environment.yaml - setup.py - tests/atomiccmd_test/command_test.py - tests/tools_test/factory_test.py - tox.ini The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/paleomix/-/commit/8063bf61112dff83e8046915715f15a442568ebf -- View it on GitLab: https://salsa.debian.org/med-team/paleomix/-/commit/8063bf61112dff83e8046915715f15a442568ebf You're receiving this email because of your account on salsa.debian.org.
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