Étienne Mollier pushed to branch upstream at Debian Med / python-pymummer
Commits: 2a9a5eaf by Étienne Mollier at 2025-11-13T21:03:05+01:00 New upstream version 0.12.0 - - - - - 47 changed files: - .gitignore - .travis.yml - README.md - + env_osx64.yml - + environment.yml - − pymummer/__init__.py - − pymummer/tests/coords_file_test.py - − pymummer/tests/nucmer_test.py - − pymummer/tests/snp_file_test.py - − pymummer/tests/snp_test.py - − pymummer/tests/variant_test.py - + pyproject.toml - install_dependencies.sh → scripts/install_dependencies.sh - − setup.py - + src/pymummer/__init__.py - pymummer/alignment.py → src/pymummer/alignment.py - pymummer/coords_file.py → src/pymummer/coords_file.py - pymummer/nucmer.py → src/pymummer/nucmer.py - pymummer/snp.py → src/pymummer/snp.py - pymummer/snp_file.py → src/pymummer/snp_file.py - pymummer/syscall.py → src/pymummer/syscall.py - pymummer/variant.py → src/pymummer/variant.py - pymummer/tests/alignment_test.py → tests/alignment_test.py - + tests/coords_file_test.py - pymummer/tests/data/coords_file_test_convert_to_msp_crunch.coords → tests/data/coords_file_test_convert_to_msp_crunch.coords - pymummer/tests/data/coords_file_test_convert_to_msp_crunch.no_offset.crunch → tests/data/coords_file_test_convert_to_msp_crunch.no_offset.crunch - pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa → tests/data/coords_file_test_convert_to_msp_crunch.qry.fa - pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa.fai → tests/data/coords_file_test_convert_to_msp_crunch.qry.fa.fai - pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa → tests/data/coords_file_test_convert_to_msp_crunch.ref.fa - pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa.fai → tests/data/coords_file_test_convert_to_msp_crunch.ref.fa.fai - pymummer/tests/data/coords_file_test_convert_to_msp_crunch.with_offset.crunch → tests/data/coords_file_test_convert_to_msp_crunch.with_offset.crunch - pymummer/tests/data/coords_file_test_no_header.coords → tests/data/coords_file_test_no_header.coords - pymummer/tests/data/coords_file_test_with_header.coords → tests/data/coords_file_test_with_header.coords - pymummer/tests/data/nucmer_test_out.coords → tests/data/nucmer_test_out.coords - pymummer/tests/data/nucmer_test_out.coords.snps → tests/data/nucmer_test_out.coords.snps - pymummer/tests/data/nucmer_test_qry.fa → tests/data/nucmer_test_qry.fa - pymummer/tests/data/nucmer_test_ref.fa → tests/data/nucmer_test_ref.fa - pymummer/tests/data/nucmer_test_write_script_no_snps.sh → tests/data/nucmer_test_write_script_no_snps.sh - pymummer/tests/data/nucmer_test_write_script_with_snps.sh → tests/data/nucmer_test_write_script_with_snps.sh - pymummer/tests/data/snp_file_test_get_all_variants.snps → tests/data/snp_file_test_get_all_variants.snps - pymummer/tests/data/snp_file_test_no_header.snps → tests/data/snp_file_test_no_header.snps - pymummer/tests/data/snp_file_test_with_header.snps → tests/data/snp_file_test_with_header.snps - + tests/nucmer_test.py - + tests/snp_file_test.py - + tests/snp_test.py - pymummer/tests/syscall_test.py → tests/syscall_test.py - + tests/variant_test.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-pymummer/-/commit/2a9a5eafa4bebd59931a2256aa6f04cb8396e205 -- View it on GitLab: https://salsa.debian.org/med-team/python-pymummer/-/commit/2a9a5eafa4bebd59931a2256aa6f04cb8396e205 You're receiving this email because of your account on salsa.debian.org.
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