Étienne Mollier pushed to branch master at Debian Med / phast
Commits: 5f831c3b by Étienne Mollier at 2025-11-15T10:25:24+01:00 New upstream version 1.8+dfsg - - - - - d3625b4f by Étienne Mollier at 2025-11-15T10:25:28+01:00 Update upstream source from tag 'upstream/1.8+dfsg' Update to upstream version '1.8+dfsg' with Debian dir 2a7066a02d3d8cd88c551627ebac2f9b911aef6d - - - - - bd043b1d by Étienne Mollier at 2025-11-15T10:28:38+01:00 d/control: declare compliance to standards version 4.7.2. - - - - - 1dc6f698 by Étienne Mollier at 2025-11-15T10:28:57+01:00 d/control: drop redundant Rules-Requires-Root: no. - - - - - f3d45f9b by Étienne Mollier at 2025-11-15T10:30:36+01:00 d/rules: slight readability improvements. - - - - - 16cf0a64 by Étienne Mollier at 2025-11-15T10:32:16+01:00 d/watch convert to v5 Github template. - - - - - 079e575f by Étienne Mollier at 2025-11-15T10:32:44+01:00 d/changelog: ready for upload to unstable. - - - - - 5 changed files: - debian/changelog - debian/control - debian/rules - debian/watch - src/lib/phylo/phast_trees.c Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +phast (1.8+dfsg-1) unstable; urgency=medium + + * New upstream version 1.8+dfsg + * d/control: declare compliance to standards version 4.7.2. + * d/control: drop redundant Rules-Requires-Root: no. + * d/rules: slight readability improvements. + * d/watch convert to v5 Github template. + + -- Étienne Mollier <[email protected]> Sat, 15 Nov 2025 10:32:38 +0100 + phast (1.7+dfsg-3) unstable; urgency=medium * Team Upload. ===================================== debian/control ===================================== @@ -11,11 +11,10 @@ Build-Depends: debhelper-compat (= 13), libtmglib-dev, libpcre2-dev, help2man -Standards-Version: 4.7.0 +Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/phast Vcs-Git: https://salsa.debian.org/med-team/phast.git Homepage: http://compgen.cshl.edu/phast/ -Rules-Requires-Root: no Package: phast Architecture: any ===================================== debian/rules ===================================== @@ -7,13 +7,19 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all override_dh_auto_clean: dh_auto_clean - cd src && $(MAKE) clean + cd src \ + && $(MAKE) clean override_dh_auto_test: ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) - cd test && PATH=$(CURDIR)/bin:$(PATH) $(MAKE) msa_view + cd test \ + && PATH=$(CURDIR)/bin:$(PATH) \ + $(MAKE) msa_view endif override_dh_installexamples: dh_installexamples - find debian/*/usr/share/doc/*/examples -type f -size +1k -exec xz \{\} \; + find debian/*/usr/share/doc/*/examples \ + -type f \ + -size +1k \ + -exec xz \{\} \; ===================================== debian/watch ===================================== @@ -1,4 +1,9 @@ -version=4 +Version: 5 -opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \ - https://github.com/CshlSiepelLab/phast/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz +Template: Github +Owner: CshlSiepelLab +Project: phast +Repack: yes +Repacksuffix: +dfsg +Dversionmangle: auto +Compression: xz ===================================== src/lib/phylo/phast_trees.c ===================================== @@ -36,6 +36,7 @@ static int idcounter = 0; /* bottom-right y */ #define BR_Y 700 +#define THRESHOLD_BRANCH_LENGTH 1e-8 /** Parse a tree from a file in Newick (New Hampshire) format */ TreeNode *tr_new_from_file(FILE *f) { @@ -82,6 +83,9 @@ TreeNode *tr_new_from_string(const char *treestr) { die("ERROR: Can't parse distance in tree (\"%s\").\n", diststr->chars); in_distance = FALSE; + if(node->dparent < THRESHOLD_BRANCH_LENGTH){ + node->dparent = 0; + } } } View it on GitLab: https://salsa.debian.org/med-team/phast/-/compare/051b6abb8f2eb6c36d7a8c9379161f96b7b24244...079e575f928f8af7221007770535e1ad62a2fcab -- View it on GitLab: https://salsa.debian.org/med-team/phast/-/compare/051b6abb8f2eb6c36d7a8c9379161f96b7b24244...079e575f928f8af7221007770535e1ad62a2fcab You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
