Andreas Tille pushed to branch master at Debian Med / qiime
Commits: eade416e by Andreas Tille at 2025-12-01T13:07:23+01:00 d/watch: version=5 - - - - - 391d2a64 by Andreas Tille at 2025-12-01T13:07:47+01:00 Standards-Version: 4.7.2 - - - - - 64a08ecb by Andreas Tille at 2025-12-01T13:08:04+01:00 New upstream version 2025.10.1 - - - - - 082cb228 by Andreas Tille at 2025-12-01T13:08:04+01:00 New upstream version - - - - - 149a0b17 by Andreas Tille at 2025-12-01T13:08:06+01:00 Update upstream source from tag 'upstream/2025.10.1' Update to upstream version '2025.10.1' with Debian dir 91bbc5b48e3a32c512db05c6d65d7e865f378060 - - - - - cd27d42e by Andreas Tille at 2025-12-01T13:08:12+01:00 Remove duplicate line from changelog. Changes-By: lintian-brush - - - - - 99dece95 by Andreas Tille at 2025-12-01T13:08:15+01:00 debputy lint --auto-fix (routine-update) - - - - - b6e4d024 by Andreas Tille at 2025-12-01T13:16:55+01:00 Refresh patches - - - - - 93d5f01f by Andreas Tille at 2025-12-01T13:18:23+01:00 Build-Depends: pybuild-plugin-pyproject - - - - - ca8c527e by Andreas Tille at 2025-12-01T13:24:44+01:00 d/copyright: Remove old FSF address - - - - - 196 changed files: - + .copier-answers.yml - .gitattributes - − .github/CONTRIBUTING.md - − .github/SUPPORT.md - − .github/rubric.png - .github/workflows/ci-dev.yaml - + .github/workflows/update-copyright-headers.yaml - .gitignore - LICENSE - − MANIFEST.in - Makefile - README.md - − ci/recipe/meta.yaml - + conda-recipe/meta.yaml - debian/changelog - debian/control - debian/copyright - − debian/patches/configparser.patch - − debian/patches/mkdir_exists_ok.patch - debian/patches/platformdirs - − debian/patches/python3.8.patch - − debian/patches/replace-crypt-module-by-hashlib.patch - debian/patches/series - debian/watch - + pyproject.toml - qiime2/__init__.py - − qiime2/_version.py - qiime2/core/__init__.py - + qiime2/core/annotate.py - qiime2/core/archive/__init__.py - qiime2/core/archive/archiver.py - qiime2/core/archive/format/__init__.py - qiime2/core/archive/format/tests/__init__.py - qiime2/core/archive/format/tests/test_util.py - qiime2/core/archive/format/tests/test_v0.py - qiime2/core/archive/format/util.py - qiime2/core/archive/format/v0.py - qiime2/core/archive/format/v1.py - qiime2/core/archive/format/v2.py - qiime2/core/archive/format/v3.py - qiime2/core/archive/format/v4.py - qiime2/core/archive/format/v5.py - qiime2/core/archive/format/v6.py - + qiime2/core/archive/format/v7_0.py - + qiime2/core/archive/format/v7_1.py - qiime2/core/archive/provenance.py - qiime2/core/archive/provenance_lib/__init__.py - qiime2/core/archive/provenance_lib/_checksum_validator.py - qiime2/core/archive/provenance_lib/archive_parser.py - qiime2/core/archive/provenance_lib/parse.py - qiime2/core/archive/provenance_lib/replay.py - qiime2/core/archive/provenance_lib/tests/__init__.py - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/VERSION - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/checksums.sha512 - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/data/ints.txt - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/metadata.yaml - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/provenance/VERSION - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/provenance/action/action.yaml - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/provenance/artifacts/f8e289f7-636b-481d-add3-a38ea3975708/VERSION - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/provenance/artifacts/f8e289f7-636b-481d-add3-a38ea3975708/action/action.yaml - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/provenance/artifacts/f8e289f7-636b-481d-add3-a38ea3975708/citations.bib - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/provenance/artifacts/f8e289f7-636b-481d-add3-a38ea3975708/metadata.yaml - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/provenance/citations.bib - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/provenance/conda-env.yaml - + qiime2/core/archive/provenance_lib/tests/data/mixed-archive-versions/e8010137-d27e-4d97-ba21-123bb917a5b4/provenance/metadata.yaml - qiime2/core/archive/provenance_lib/tests/test_archive_parser.py - qiime2/core/archive/provenance_lib/tests/test_checksum_validator.py - qiime2/core/archive/provenance_lib/tests/test_parse.py - qiime2/core/archive/provenance_lib/tests/test_replay.py - qiime2/core/archive/provenance_lib/tests/test_usage_drivers.py - qiime2/core/archive/provenance_lib/tests/test_util.py - qiime2/core/archive/provenance_lib/tests/test_version_parser.py - qiime2/core/archive/provenance_lib/tests/test_yaml_constructors.py - qiime2/core/archive/provenance_lib/tests/testing_utilities.py - qiime2/core/archive/provenance_lib/usage_drivers.py - qiime2/core/archive/provenance_lib/util.py - qiime2/core/archive/tests/__init__.py - qiime2/core/archive/tests/test_archiver.py - qiime2/core/archive/tests/test_citations.py - qiime2/core/archive/tests/test_provenance.py - qiime2/core/cache.py - qiime2/core/cite.py - qiime2/core/enan.py - qiime2/core/exceptions.py - qiime2/core/format.py - qiime2/core/missing.py - qiime2/core/path.py - qiime2/core/testing/__init__.py - qiime2/core/testing/examples.py - qiime2/core/testing/format.py - qiime2/core/testing/mapped.py - qiime2/core/testing/method.py - qiime2/core/testing/pipeline.py - qiime2/core/testing/plugin.py - qiime2/core/testing/tests/__init__.py - qiime2/core/testing/tests/test_mapped_actions.py - qiime2/core/testing/transformer.py - qiime2/core/testing/type.py - qiime2/core/testing/util.py - qiime2/core/testing/validator.py - qiime2/core/testing/visualizer.py - qiime2/core/tests/__init__.py - + qiime2/core/tests/test_annotate.py - qiime2/core/tests/test_cache.py - qiime2/core/tests/test_enan.py - qiime2/core/tests/test_missing.py - qiime2/core/tests/test_path.py - qiime2/core/tests/test_pipeline_resumption.py - qiime2/core/tests/test_util.py - qiime2/core/tests/test_validate.py - qiime2/core/transform.py - qiime2/core/type/__init__.py - qiime2/core/type/collection.py - qiime2/core/type/grammar.py - qiime2/core/type/meta.py - qiime2/core/type/parse.py - qiime2/core/type/primitive.py - qiime2/core/type/semantic.py - qiime2/core/type/signature.py - qiime2/core/type/template.py - qiime2/core/type/tests/__init__.py - qiime2/core/type/tests/test_collection.py - qiime2/core/type/tests/test_grammar.py - qiime2/core/type/tests/test_meta.py - qiime2/core/type/tests/test_parse.py - qiime2/core/type/tests/test_primitive.py - qiime2/core/type/tests/test_semantic.py - qiime2/core/type/tests/test_util.py - qiime2/core/type/util.py - qiime2/core/type/visualization.py - qiime2/core/util.py - qiime2/core/validate.py - qiime2/jupyter/__init__.py - qiime2/jupyter/handlers.py - qiime2/jupyter/hooks.py - qiime2/jupyter/template.py - qiime2/metadata/__init__.py - qiime2/metadata/base.py - qiime2/metadata/io.py - qiime2/metadata/metadata.py - qiime2/metadata/tests/__init__.py - qiime2/metadata/tests/test_io.py - qiime2/metadata/tests/test_metadata.py - qiime2/metadata/tests/test_metadata_column.py - qiime2/plugin/__init__.py - qiime2/plugin/model/__init__.py - qiime2/plugin/model/base.py - qiime2/plugin/model/directory_format.py - qiime2/plugin/model/file_format.py - qiime2/plugin/model/tests/__init__.py - qiime2/plugin/model/tests/test_directory_format.py - qiime2/plugin/model/tests/test_file_format.py - qiime2/plugin/plugin.py - qiime2/plugin/testing.py - qiime2/plugin/tests/__init__.py - qiime2/plugin/tests/test_plugin.py - qiime2/plugin/tests/test_tests.py - qiime2/plugin/util.py - qiime2/plugins.py - qiime2/sdk/__init__.py - qiime2/sdk/action.py - qiime2/sdk/actiongraph.py - + qiime2/sdk/context/__init__.py - + qiime2/sdk/context/asynchronous.py - qiime2/sdk/context.py → qiime2/sdk/context/base.py - + qiime2/sdk/context/parallel.py - + qiime2/sdk/iresult.py - qiime2/sdk/parallel_config.py - qiime2/sdk/plugin_manager.py - qiime2/sdk/proxy.py - qiime2/sdk/result.py - qiime2/sdk/results.py - qiime2/sdk/tests/__init__.py - qiime2/sdk/tests/test_action.py - qiime2/sdk/tests/test_actiongraph.py - qiime2/sdk/tests/test_artifact.py - qiime2/sdk/tests/test_config.py - qiime2/sdk/tests/test_method.py - qiime2/sdk/tests/test_pipeline.py - qiime2/sdk/tests/test_plugin_manager.py - qiime2/sdk/tests/test_result.py - qiime2/sdk/tests/test_results.py - qiime2/sdk/tests/test_usage.py - qiime2/sdk/tests/test_util.py - qiime2/sdk/tests/test_visualization.py - qiime2/sdk/tests/test_visualizer.py - qiime2/sdk/usage.py - qiime2/sdk/util.py - qiime2/tests/__init__.py - qiime2/tests/mystery_stew.py - qiime2/tests/test_artifact_api.py - qiime2/tests/test_util.py - qiime2/util.py - − setup.cfg - − setup.py - − versioneer.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/qiime/-/compare/ea67e91f62282c5d2783049127f60bd89b559e0b...ca8c527e50cab90dff580153286917e61a32badc -- View it on GitLab: https://salsa.debian.org/med-team/qiime/-/compare/ea67e91f62282c5d2783049127f60bd89b559e0b...ca8c527e50cab90dff580153286917e61a32badc You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
