Andreas Tille pushed to branch master at Debian Med / phyml
Commits: 62211745 by Andreas Tille at 2025-12-06T21:12:39+01:00 Restrict to 64 bit architectures only by Build-Depending architecture-is-64-bit Closes: #1106652 - - - - - 7e5cf91a by Andreas Tille at 2025-12-06T21:15:01+01:00 d/watch: version=5 - - - - - a841b84f by Andreas Tille at 2025-12-06T21:15:25+01:00 New upstream version 3.3.20250515 - - - - - 8ff80e15 by Andreas Tille at 2025-12-06T21:15:25+01:00 New upstream version - - - - - f089d897 by Andreas Tille at 2025-12-06T21:15:30+01:00 Update upstream source from tag 'upstream/3.3.20250515' Update to upstream version '3.3.20250515' with Debian dir e4989ce0aad48d13ffce2ef86db9741d3f270936 - - - - - 887f1325 by Andreas Tille at 2025-12-06T21:15:31+01:00 Standards-Version: 4.7.2 (routine-update) - - - - - f91228c8 by Andreas Tille at 2025-12-06T22:30:14+01:00 Refresh patches - - - - - 130 changed files: - + .github/FUNDING.yml - + .github/workflows/ci.yaml - .gitignore - + Makefile - Makefile.am - autogen.sh - + config.h - + config.log - + config.status - configure.ac - debian/changelog - debian/control - debian/patches/apply-cflags.patch - debian/patches/apply-ldflags.patch - debian/patches/filter-sse3-intrinsics.patch - debian/patches/fix_declaration_of_temp.patch - debian/patches/fix_wrong_initialisation_of_array.patch - debian/patches/no-configure-ac-date.patch - debian/patches/no-march-native.patch - debian/patches/sse_only_if_supported.patch - debian/patches/typos.patch - debian/watch - + doc/Makefile - doc/Makefile.am - doc/fig/phyrexlog.pdf - doc/naturemag.bst - + doc/phyml-manual.aux - + doc/phyml-manual.bbl - + doc/phyml-manual.blg - + doc/phyml-manual.fls - + doc/phyml-manual.idx - + doc/phyml-manual.ilg - + doc/phyml-manual.ind - + doc/phyml-manual.log - doc/phyml-manual.pdf - doc/phyml-manual.tex - + doc/phyml-manual.toc - doc/ref.bib - examples/lg4x/X1.mat - examples/lg4x/X2.mat - examples/lg4x/X3.mat - examples/lg4x/X4.mat - examples/lg4x/lg4x.xml - examples/nexus_example.nxs - examples/nucleic - examples/phyrex/h1n1.nxs - examples/phyrex/usa_coord.txt - examples/proteic - + src/Makefile - src/Makefile.am - − src/Makefile_mc.am - − src/Makefile_r.am - src/alrt.c - src/ancestral.c - src/avx.c - src/beagle_utils.c - src/cl.c - + src/cv.c - + src/cv.h - src/date.c - src/draw.c - src/draw.h - + src/evolve.c - + src/evolve.h - src/free.c - src/free.h - src/geo.c - src/help.c - src/help.h - + src/ibm.c - + src/ibm.h - src/init.c - src/init.h - src/interface.c - src/interface.h - src/invitee.c - src/io.c - src/io.h - + src/iou.c - + src/iou.h - + src/iwn.c - + src/iwn.h - src/lk.c - src/lk.h - src/location.c - src/location.h - src/m4.c - src/m4.h - src/main.c - src/make.c - src/make.h - src/mcmc.c - src/mcmc.h - src/mixt.c - src/mixt.h - src/models.c - src/models.h - src/mpi_boot.c - src/nexus.c - src/nexus.h - src/optimiz.c - src/optimiz.h - + src/p1.nxs - src/pars.c - src/phyrex.c - src/phyrex.h - src/rates.c - src/rates.h - src/rrw.c - src/rrw.h - src/rw.c - src/rw.h - src/simu.c - src/slfv.c - src/slfv.h - src/spr.c - src/sse.c - src/sse.h - + src/sse2neon.h - src/stats.c - src/stats.h - src/times.c - src/times.h - src/utilities.c - src/utilities.h - + src/velocity.c - + src/velocity.h - src/xml.c - src/xml.h - + stamp-h1 The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/phyml/-/compare/cce462bb3bfc7bb72ff92ab4d04b4fc733a76656...f91228c858d63e3f7d6979c92f9dea61d0a8432e -- View it on GitLab: https://salsa.debian.org/med-team/phyml/-/compare/cce462bb3bfc7bb72ff92ab4d04b4fc733a76656...f91228c858d63e3f7d6979c92f9dea61d0a8432e You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
