Andreas Tille pushed to branch upstream at Debian Med / phyml
Commits: a841b84f by Andreas Tille at 2025-12-06T21:15:25+01:00 New upstream version 3.3.20250515 - - - - - 118 changed files: - + .github/FUNDING.yml - + .github/workflows/ci.yaml - .gitignore - + Makefile - Makefile.am - autogen.sh - + config.h - + config.log - + config.status - configure.ac - + doc/Makefile - doc/Makefile.am - doc/fig/phyrexlog.pdf - doc/naturemag.bst - + doc/phyml-manual.aux - + doc/phyml-manual.bbl - + doc/phyml-manual.blg - + doc/phyml-manual.fls - + doc/phyml-manual.idx - + doc/phyml-manual.ilg - + doc/phyml-manual.ind - + doc/phyml-manual.log - doc/phyml-manual.pdf - doc/phyml-manual.tex - + doc/phyml-manual.toc - doc/ref.bib - examples/lg4x/X1.mat - examples/lg4x/X2.mat - examples/lg4x/X3.mat - examples/lg4x/X4.mat - examples/lg4x/lg4x.xml - examples/nexus_example.nxs - examples/nucleic - examples/phyrex/h1n1.nxs - examples/phyrex/usa_coord.txt - examples/proteic - + src/Makefile - src/Makefile.am - − src/Makefile_mc.am - − src/Makefile_r.am - src/alrt.c - src/ancestral.c - src/avx.c - src/beagle_utils.c - src/cl.c - + src/cv.c - + src/cv.h - src/date.c - src/draw.c - src/draw.h - + src/evolve.c - + src/evolve.h - src/free.c - src/free.h - src/geo.c - src/help.c - src/help.h - + src/ibm.c - + src/ibm.h - src/init.c - src/init.h - src/interface.c - src/interface.h - src/invitee.c - src/io.c - src/io.h - + src/iou.c - + src/iou.h - + src/iwn.c - + src/iwn.h - src/lk.c - src/lk.h - src/location.c - src/location.h - src/m4.c - src/m4.h - src/main.c - src/make.c - src/make.h - src/mcmc.c - src/mcmc.h - src/mixt.c - src/mixt.h - src/models.c - src/models.h - src/mpi_boot.c - src/nexus.c - src/nexus.h - src/optimiz.c - src/optimiz.h - + src/p1.nxs - src/pars.c - src/phyrex.c - src/phyrex.h - src/rates.c - src/rates.h - src/rrw.c - src/rrw.h - src/rw.c - src/rw.h - src/simu.c - src/slfv.c - src/slfv.h - src/spr.c - src/sse.c - src/sse.h - + src/sse2neon.h - src/stats.c - src/stats.h - src/times.c - src/times.h - src/utilities.c - src/utilities.h - + src/velocity.c - + src/velocity.h - src/xml.c - src/xml.h - + stamp-h1 The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/phyml/-/commit/a841b84fc6615b84ca82c85eaab9a7fd150decc1 -- View it on GitLab: https://salsa.debian.org/med-team/phyml/-/commit/a841b84fc6615b84ca82c85eaab9a7fd150decc1 You're receiving this email because of your account on salsa.debian.org.
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