Aryan Karamtoth pushed to branch upstream at Debian Med / python-bioframe
Commits: 41f89b82 by Aryan Karamtoth at 2025-12-06T08:05:10+05:30 New upstream version 0.8.0 - - - - - 102 changed files: - + .github/dependabot.yml - + .github/workflows/ci.yml - + .github/workflows/publish.yml - .gitignore - + .pre-commit-config.yaml - readthedocs.yml → .readthedocs.yaml - CHANGES.md - + CITATION.cff - + CONTRIBUTING.md - LICENSE - − MANIFEST.in - − Makefile - README.md - bioframe/__init__.py - − bioframe/_version.py - bioframe/core/__init__.py - bioframe/core/arrops.py - bioframe/core/checks.py - bioframe/core/construction.py - bioframe/core/specs.py - bioframe/core/stringops.py - bioframe/extras.py - bioframe/io/__init__.py - + bioframe/io/assembly.py - + bioframe/io/bed.py - − bioframe/io/data/GRCh37.seqinfo.tsv - + bioframe/io/data/_assemblies.yml - bioframe/io/data/ce10.seqinfo.tsv - bioframe/io/data/ce11.seqinfo.tsv - bioframe/io/data/danRer10.seqinfo.tsv - bioframe/io/data/danRer11.seqinfo.tsv - bioframe/io/data/dm3.seqinfo.tsv - bioframe/io/data/dm6.seqinfo.tsv - + bioframe/io/data/hg19.cytoband.tsv - bioframe/io/data/hg19.seqinfo.tsv - + bioframe/io/data/hg38.cytoband.tsv - bioframe/io/data/hg38.seqinfo.tsv - + bioframe/io/data/hs1.cytoband.tsv - + bioframe/io/data/hs1.seqinfo.tsv - bioframe/io/data/mm10.seqinfo.tsv - bioframe/io/data/mm39.seqinfo.tsv - bioframe/io/data/mm9.seqinfo.tsv - bioframe/io/data/sacCer3.seqinfo.tsv - − bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv - − bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv - bioframe/io/data/wuhCor1.seqinfo.tsv - bioframe/io/fileops.py - bioframe/io/resources.py - bioframe/io/schemas.py - bioframe/ops.py - bioframe/sandbox/clients.py - bioframe/sandbox/gtf_io.py - bioframe/sandbox/parquet_io.py - bioframe/vis.py - docs/api-extras.rst - docs/api-fileops.rst - docs/api-intervalops.rst - docs/api-lowlevel.md - docs/api-resources.rst - docs/conf.py - + docs/guide-bedtools.md - docs/guide-definitions.rst - docs/guide-intervalops.md - docs/guide-io.ipynb - docs/guide-performance.ipynb - docs/guide-quickstart.rst - docs/guide-recipes.md - docs/guide-specifications.rst - docs/index.rst - docs/lowlevel/arrops.rst - docs/lowlevel/specs.rst - docs/lowlevel/stringops.rst - − docs/requirements_doc.txt - − docs/requirements_rtd.txt - + docs/times100.bw - docs/tutorials/tutorial_assign_motifs_to_peaks.ipynb - docs/tutorials/tutorial_assign_peaks_to_genes.ipynb - + pyproject.toml - − requirements-dev.txt - − requirements.txt - − setup.cfg - − setup.py - + tests/test_assembly_info.py - + tests/test_bed.py - tests/test_core_checks.py - tests/test_core_construction.py - tests/test_core_specs.py - tests/test_core_stringops.py - + tests/test_data/bed12.bed - + tests/test_data/bed9.bed - + tests/test_data/jaspar.bed - + tests/test_data/narrowPeak.bed - tests/test_data/test.chrom.sizes - + tests/test_data/toy.bam - + tests/test_data/toy.bam.bai - + tests/test_data/toy.sam - tests/test_extras.py - tests/test_io.py → tests/test_fileops.py - tests/test_ops.py - tests/test_ops_select.py - + tests/test_resources.py - + tests/test_vis.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-bioframe/-/commit/41f89b82bc6c8479559807196588c73c5e0f538c -- View it on GitLab: https://salsa.debian.org/med-team/python-bioframe/-/commit/41f89b82bc6c8479559807196588c73c5e0f538c You're receiving this email because of your account on salsa.debian.org.
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