Étienne Mollier pushed to branch master at Debian Med / clonalorigin
Commits: 6308e01a by Étienne Mollier at 2026-01-03T19:10:27+01:00 d/control: fix typo in Recemmends field. Thanks: Carles Pina i Estany Closes: #1112565 - - - - - d8f8c016 by Étienne Mollier at 2026-01-03T19:11:26+01:00 d/control: drop redundant Priority: optional. - - - - - 05edc031 by Étienne Mollier at 2026-01-03T19:11:50+01:00 d/control: drop redundant Rules-Requires-Root: no. - - - - - 72e9b7c7 by Étienne Mollier at 2026-01-03T19:12:08+01:00 d/control: declare compliance to standards version 4.7.3. - - - - - 22a5044d by Étienne Mollier at 2026-01-03T19:12:52+01:00 d/watch: convert to v5 Github template. - - - - - 4cf230ae by Étienne Mollier at 2026-01-03T19:20:54+01:00 d/patches/*: normalize Last-Update timestamps. - - - - - 028c4a23 by Étienne Mollier at 2026-01-03T19:22:13+01:00 d/changelog: ready for upload to unstable. - - - - - 6 changed files: - debian/changelog - debian/control - debian/patches/gcc-11.patch - debian/patches/portability.patch - debian/patches/qt5.patch - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,15 @@ +clonalorigin (1.0-9) unstable; urgency=medium + + * d/control: fix typo in Recemmends field. + Thanks to Carles Pina i Estany (Closes: #1112565) + * d/control: drop redundant Priority: optional. + * d/control: drop redundant Rules-Requires-Root: no. + * d/control: declare compliance to standards version 4.7.3. + * d/watch: convert to v5 Github template. + * d/patches/*: normalize Last-Update timestamps. + + -- Étienne Mollier <[email protected]> Sat, 03 Jan 2026 19:21:57 +0100 + clonalorigin (1.0-8) unstable; urgency=medium * shorten-test.patch: new: reduce stress on buildds. (Closes: #884475) ===================================== debian/control ===================================== @@ -3,24 +3,22 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Andreas Tille <[email protected]>, Étienne Mollier <[email protected]> Section: science -Priority: optional Build-Depends: debhelper-compat (= 13), libgsl-dev, # qt5-qmake-bin, # qttools5-dev, # libqt5svg5-dev, rename -Standards-Version: 4.6.2 +Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/med-team/clonalorigin Vcs-Git: https://salsa.debian.org/med-team/clonalorigin.git Homepage: https://github.com/xavierdidelot/clonalorigin -Rules-Requires-Root: no Package: clonalorigin Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} -Recommends: libxml-parserl-perl +Recommends: libxml-parser-perl Description: inference of homologous recombination in bacteria using whole genome sequences Bacteria, unlike us, can reproduce on their own. They do however have mechanisms that transfer DNA between organisms, a process more formally ===================================== debian/patches/gcc-11.patch ===================================== @@ -1,7 +1,7 @@ Description: Fix build issue with gcc-11 Bug-Debian: https://bugs.debian.org/984018 Author: Andreas Tille <[email protected]> -Last-Update: Thu, 21 Oct 2021 18:21:44 +0200 +Last-Update: 2021-10-21 Forwarded: https://github.com/xavierdidelot/ClonalOrigin/issues/9 --- a/warg/src/rng.cpp ===================================== debian/patches/portability.patch ===================================== @@ -1,5 +1,5 @@ Author: Andreas Tille <[email protected]> -Last-Update: Sat, 02 Dec 2017 17:06:16 +0100 +Last-Update: 2017-12-02 Description: Drop -msse for portability reasons Forwarded: not-needed ===================================== debian/patches/qt5.patch ===================================== @@ -2,7 +2,7 @@ Comment: This patch is deactivated but do NOT delete it. It enables compilation of the package but needs more work which is explained in https://lists.debian.org/debian-mentors/2017/12/msg00025.html Author: Andreas Tille <[email protected]> -Last-Update: Sat, 02 Dec 2017 17:06:16 +0100 +Last-Update: 2017-12-02 Description: Migration from Qt4 to Qt5 --- a/gui/mainwindowimpl.cpp ===================================== debian/watch ===================================== @@ -1,4 +1,5 @@ -version=4 +Version: 5 -opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%" \ - https://github.com/xavierdidelot/clonalorigin/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz +Template: Github +Owner: xavierdidelot +Project: clonalorigin View it on GitLab: https://salsa.debian.org/med-team/clonalorigin/-/compare/e853a2b88171ea41feb19016e6f81e820bb9ddfb...028c4a238fe38fb2f9b0929b42a34d9e65584290 -- View it on GitLab: https://salsa.debian.org/med-team/clonalorigin/-/compare/e853a2b88171ea41feb19016e6f81e820bb9ddfb...028c4a238fe38fb2f9b0929b42a34d9e65584290 You're receiving this email because of your account on salsa.debian.org.
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