Michael R. Crusoe pushed to branch master at Debian Med / macsyfinder
Commits: 0c9b1da9 by Michael R. Crusoe at 2026-01-31T13:09:34+01:00 d/watch: upgrade to syntax version 5 - - - - - 9c7f937f by Michael R. Crusoe at 2026-01-31T13:34:14+01:00 New upstream version - - - - - bc360d51 by Michael R. Crusoe at 2026-01-31T13:34:17+01:00 New upstream version 2.1.6 - - - - - abd2b24c by Michael R. Crusoe at 2026-01-31T13:38:48+01:00 Update upstream source from tag 'upstream/2.1.6' Update to upstream version '2.1.6' with Debian dir 60cb6c533483987c57787d70a271bd508187ab38 - - - - - edd1c1d3 by Michael R. Crusoe at 2026-01-31T13:38:49+01:00 Standards-Version: 4.7.3 (routine-update) - - - - - 8f28e05a by Michael R. Crusoe at 2026-01-31T13:39:02+01:00 Remove duplicate line from changelog. Changes-By: lintian-brush - - - - - 71 changed files: - .github/workflows/testing.yml - CONTRIBUTORS.md - codemeta.json - debian/changelog - debian/control - debian/watch - doc/source/modeler_guide/modeling.rst - doc/source/user_guide/input.rst - doc/source/user_guide/new_v2.rst - nextflow.config - pyproject.toml - src/macsyfinder/__init__.py - src/macsyfinder/scripts/macsy_gembase_split.py - src/macsyfinder/scripts/macsy_merge_results.py - src/macsyfinder/scripts/macsyconfig.py - src/macsyfinder/scripts/macsyprofile.py - src/macsyfinder/scripts/msf.py - + tests/data/base/test_16.faa - + tests/data/functional_test_ordered_circular_small/all_best_solutions.tsv - + tests/data/functional_test_ordered_circular_small/all_systems.tsv - + tests/data/functional_test_ordered_circular_small/all_systems.txt - + tests/data/functional_test_ordered_circular_small/best_solution.tsv - + tests/data/functional_test_ordered_circular_small/best_solution_loners.tsv - + tests/data/functional_test_ordered_circular_small/best_solution_multisystems.tsv - + tests/data/functional_test_ordered_circular_small/best_solution_summary.tsv - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBB.res_hmm_extract - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBB.search_hmm.err - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBB.search_hmm.out - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBQ.res_hmm_extract - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBQ.search_hmm.err - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBQ.search_hmm.out - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_t4cp1.res_hmm_extract - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_t4cp1.search_hmm.err - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_t4cp1.search_hmm.out - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_virb4.res_hmm_extract - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_virb4.search_hmm.err - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_virb4.search_hmm.out - + tests/data/functional_test_ordered_circular_small/macsyfinder.conf - + tests/data/functional_test_ordered_circular_small/rejected_candidates.tsv - + tests/data/functional_test_ordered_circular_small/rejected_candidates.txt - + tests/data/functional_test_ordered_circular_small_2/all_best_solutions.tsv - + tests/data/functional_test_ordered_circular_small_2/all_systems.tsv - + tests/data/functional_test_ordered_circular_small_2/all_systems.txt - + tests/data/functional_test_ordered_circular_small_2/best_solution.tsv - + tests/data/functional_test_ordered_circular_small_2/best_solution_loners.tsv - + tests/data/functional_test_ordered_circular_small_2/best_solution_multisystems.tsv - + tests/data/functional_test_ordered_circular_small_2/best_solution_summary.tsv - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBB.res_hmm_extract - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBB.search_hmm.err - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBB.search_hmm.out - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBQ.res_hmm_extract - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBQ.search_hmm.err - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBQ.search_hmm.out - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_t4cp1.res_hmm_extract - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_t4cp1.search_hmm.err - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_t4cp1.search_hmm.out - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_virb4.res_hmm_extract - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_virb4.search_hmm.err - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_virb4.search_hmm.out - + tests/data/functional_test_ordered_circular_small_2/macsyfinder.conf - + tests/data/functional_test_ordered_circular_small_2/rejected_candidates.tsv - + tests/data/functional_test_ordered_circular_small_2/rejected_candidates.txt - + tests/data/models/functional/definitions/MOB_light.xml - + tests/data/models/functional/definitions/MOB_light_no_loner.xml - + tests/data/models/functional/profiles/T4SS_MOBB.hmm - + tests/data/models/functional/profiles/T4SS_MOBQ.hmm - + tests/data/models/functional/profiles/T4SS_t4cp1.hmm - + tests/data/models/functional/profiles/T4SS_virb4.hmm - tests/test_functional_test.py - tests/test_macsyconfig.py - tests/test_scripts.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/macsyfinder/-/compare/afb0fa41c2ed415a41a0773211da06652e821af8...8f28e05aff7ef409d70238a7f8c125e5e4a56b0c -- View it on GitLab: https://salsa.debian.org/med-team/macsyfinder/-/compare/afb0fa41c2ed415a41a0773211da06652e821af8...8f28e05aff7ef409d70238a7f8c125e5e4a56b0c You're receiving this email because of your account on salsa.debian.org.
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